Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_028809.1 Length=58637 Score E Sequences producing significant alignments: (Bits) Value seq11813 84.2 8e-12 seq2120 84.2 8e-12 >seq11813 Length=1191 Score = 84.2 bits (92), Expect = 8e-12 Identities = 127/176 (72%), Gaps = 11/176 (6%) Strand=Plus/Plus Query 46019 TCGTCGTGCACCGACAGGATGACGTCGTAGATGCCCTCGTCGTGG-CAGCGGAGCAT--- 46074 ||||| ||||||| ||| |||| |||||| || | ||| | || ||| |||| Sbjct 37 TCGTCATGCACCGTCAGTATGATGTCGTAA---CCGTTGTCCTCCACACCGG-GCATATT 92 Query 46075 CGCGTCCGCCATCAGGTCGCGGGCCGTGGCCTGGGTGATGTTCTCGACGAGCATGCCGCC 46134 |||| ||||||| || ||||| || |||||||| | |||||| | ||| ||||||| Sbjct 93 CGCG---GCCATCACATCACGGGCGGTAGCCTGGGTTACGTTCTCTGCCAGCTTGCCGCC 149 Query 46135 GTAGGTGTCCTGACGACGCCACTTCTTCGTGTACGGGTCGACGCCCATGTAGGTGA 46190 |||||| | | | || |||| ||| |||| | || || |||||||||| ||| Sbjct 150 GTAGGTTTGCAGGCGTTGCCATTTCCGGCTGTAGGTGTTGATGCCCATGTAGCTGA 205 >seq2120 Length=15447 Score = 84.2 bits (92), Expect = 8e-12 Identities = 127/176 (72%), Gaps = 11/176 (6%) Strand=Plus/Minus Query 46019 TCGTCGTGCACCGACAGGATGACGTCGTAGATGCCCTCGTCGTGG-CAGCGGAGCAT--- 46074 ||||| ||||||| ||| |||| |||||| || | ||| | || ||| |||| Sbjct 12831 TCGTCATGCACCGTCAGTATGATGTCGTAA---CCGTTGTCCTCCACACCGG-GCATATT 12776 Query 46075 CGCGTCCGCCATCAGGTCGCGGGCCGTGGCCTGGGTGATGTTCTCGACGAGCATGCCGCC 46134 |||| ||||||| || ||||| || |||||||| | |||||| | ||| ||||||| Sbjct 12775 CGCG---GCCATCACATCACGGGCGGTAGCCTGGGTTACGTTCTCTGCCAGCTTGCCGCC 12719 Query 46135 GTAGGTGTCCTGACGACGCCACTTCTTCGTGTACGGGTCGACGCCCATGTAGGTGA 46190 |||||| | | | || |||| ||| |||| | || || |||||||||| ||| Sbjct 12718 GTAGGTTTGCAGGCGTTGCCATTTCCGGCTGTAGGTGTTGATGCCCATGTAGCTGA 12663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187479976036806