Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_028931.1 Length=55108 Score E Sequences producing significant alignments: (Bits) Value seq11813 80.6 9e-11 seq2120 80.6 9e-11 >seq11813 Length=1191 Score = 80.6 bits (88), Expect = 9e-11 Identities = 123/173 (71%), Gaps = 13/173 (8%) Strand=Plus/Plus Query 43443 TCGTCGTGCACCGACAGGATGACGTCGTACA---TGCCCTCCTGGTGGCACCG--CAGCA 43497 ||||| ||||||| ||| |||| |||||| || ||||| ||||| || Sbjct 37 TCGTCATGCACCGTCAGTATGATGTCGTAACCGTTGTCCTCCA-----CACCGGGCATAT 91 Query 43498 TCGCGTCTGCCATCAGGTCGCGCGCCGTCGCCTGGGTGATGTTCTCCACCAGCATCCCGC 43557 ||||| ||||||| || || || || |||||||| | |||||| ||||| | |||| Sbjct 92 TCGCG---GCCATCACATCACGGGCGGTAGCCTGGGTTACGTTCTCTGCCAGCTTGCCGC 148 Query 43558 CGTAGGTGTCCTGCCGCCGCCACTTCTTGGTGTACGGGTCGACGCCCATGTAG 43610 ||||||| | | | || |||| ||| | |||| | || || |||||||||| Sbjct 149 CGTAGGTTTGCAGGCGTTGCCATTTCCGGCTGTAGGTGTTGATGCCCATGTAG 201 >seq2120 Length=15447 Score = 80.6 bits (88), Expect = 9e-11 Identities = 123/173 (71%), Gaps = 13/173 (8%) Strand=Plus/Minus Query 43443 TCGTCGTGCACCGACAGGATGACGTCGTACA---TGCCCTCCTGGTGGCACCG--CAGCA 43497 ||||| ||||||| ||| |||| |||||| || ||||| ||||| || Sbjct 12831 TCGTCATGCACCGTCAGTATGATGTCGTAACCGTTGTCCTCCA-----CACCGGGCATAT 12777 Query 43498 TCGCGTCTGCCATCAGGTCGCGCGCCGTCGCCTGGGTGATGTTCTCCACCAGCATCCCGC 43557 ||||| ||||||| || || || || |||||||| | |||||| ||||| | |||| Sbjct 12776 TCGCG---GCCATCACATCACGGGCGGTAGCCTGGGTTACGTTCTCTGCCAGCTTGCCGC 12720 Query 43558 CGTAGGTGTCCTGCCGCCGCCACTTCTTGGTGTACGGGTCGACGCCCATGTAG 43610 ||||||| | | | || |||| ||| | |||| | || || |||||||||| Sbjct 12719 CGTAGGTTTGCAGGCGTTGCCATTTCCGGCTGTAGGTGTTGATGCCCATGTAG 12667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 176189393681580