Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_029015.2 Length=33509 Score E Sequences producing significant alignments: (Bits) Value seq1601 239 1e-58 seq2 132 1e-26 seq10505 127 4e-25 seq2192 127 4e-25 seq81 120 7e-23 seq8600 84.2 5e-12 >seq1601 Length=30922 Score = 239 bits (264), Expect = 1e-58 Identities = 362/504 (72%), Gaps = 12/504 (2%) Strand=Plus/Minus Query 27567 GCCTATTACAACGAAATCGATCCCTTCGCCGCGCAATGGCTGCGCAACCTGATCGACGCT 27626 |||| || ||||| | || |||| | | ||| |||||||| |||||||| | ||| Sbjct 15614 GCCTGGTATAACGACACTGACCCCTATGTGGGGCAGTGGCTGCGAAACCTGATGGCCGCC 15555 Query 27627 GGGCACATCGCCCCGGGCGTCGTTGACACTCGCTCAATTGAGGA-AGTAACCGCAAATGA 27685 ||||| || || || || | || || || ||||| ||||| | ||| | | | ||| Sbjct 15554 GGGCATATTGCGCCTGGTGATGTCGATGAACGTTCAATCGAGGAGATTAAACCCGA-TGA 15496 Query 27686 CCTTAAAG-GATTCACGCAATGCCACTTCTTTGCCGGGATCGGTGTGTGGTCTTACGCCC 27744 ||| || | | ||| || || || ||||| ||||| ||||| ||||| ||||||| Sbjct 15495 G-TTACAGAGCTACACCCAGTGTCATTTCTTCGCCGGAATCGGCACCTGGTCATACGCCC 15437 Query 27745 TGCGCCGCGCAGGATGGCCCGATGATCGCCCCGTCTGGACAGGTTCATGCCCCTGCCAGC 27804 |||| | | |||||||||||| ||||| |||||||| || || ||||||| Sbjct 15436 TGCGAAAAGTGTGCTGGCCCGATGATAAACCCGTGTGGACAGGCAGTTGTCCGTGCCAGC 15377 Query 27805 CTTTCAGCGCCTGC-GGAAAGCGACAGGGATTTG---ACGATCCCCGCCATCATTGGCCC 27860 |||||||| || || || ||| || ||||||||| |||| | ||| | || ||||| Sbjct 15376 CTTTCAGC-CCGGCAGGCAAGGGAAAGGGATTTGCTGACGAGCGGCGC--TTAT-GGCCC 15321 Query 27861 TCATGGGGTCACCTTATTAAGGTGTGTGCGCCTCACGTTGTCTTTGGGGAACAGGTTGCA 27920 | | ||||| || || ||| ||| ||||| ||||||| || ||||||||| Sbjct 15320 GCGTTCTTCCACCTCATCCAGCAGTGCAAACCTGACGTTATCTTTGGTGAGCAGGTTGCA 15261 Query 27921 AGCAAAGACGGCCTCGCATGGCTCGACGCTGTACAGGCTGATCTGGAAAACGCGGATTAT 27980 ||| ||||| ||||| ||||||||| ||||||| ||| |||||| | | | || Sbjct 15260 AGCCCTGACGGACTCGCTTGGCTCGACCTTGTACAGATTGACCTGGAAGCAGAGAACTAC 15201 Query 27981 GCCTTCGCAGGTTTCGATCTCTGCGCTGCGGGCTTCGGTGCCCCGCACATCCGCCAGCGC 28040 ||| |||| | ||| | |||||||||||||||||||| ||||||| ||| || || Sbjct 15200 GCCACAGCAGCGCTTGATTTATGCGCTGCGGGCTTCGGTGCGCCGCACAGCCGACAACGA 15141 Query 28041 CTCTTCTGGGTGGCCGACGCCGAC 28064 || | |||||||||||||||| || Sbjct 15140 CTTTACTGGGTGGCCGACGCCCAC 15117 Score = 125 bits (138), Expect = 2e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 28363 ACGGCTTCTGGGGATCTGCTGACTGGCTTTTCTGCCGGGATGGAAAGTGGAGGCCAGTTA 28422 ||||||||||| || ||||||||||| | ||||||||||||||| ||| |||||||| Sbjct 14887 ACGGCTTCTGGCGAGAGGCTGACTGGCTCTGCTGCCGGGATGGAAAATGGCGGCCAGTTG 14828 Query 28423 AACCCGGAATTAGCCCTTTGGTTGATGGGGTTGCCGGACGAGTGGGCCAGCTGCGCGCCT 28482 ||||||| | |||| ||| ||||||| || || ||||||| | |||||||||| Sbjct 14827 AACCCGGCACACGCCCGCTGGCTGATGGGATTACCAACAGAGTGGGACGACTGCGCGCCT 14768 Query 28483 ACGGTAATGCCATCGTTGCGCC 28504 |||||||| || || |||||| Sbjct 14767 ACGGTAATACCCTCAATGCGCC 14746 >seq2 Length=8990745 Score = 132 bits (146), Expect = 1e-26 Identities = 189/260 (73%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 252 GCGTAAGGGTTGAAGCGCACCACGTCGATCCCCAGCCAGTCGTTTAACTCTTTCAG-GCT 310 ||||| ||||||||||| | ||| || || | ||||||||| || | | ||||| ||| Sbjct 6245056 GCGTAGGGGTTGAAGCGGATCACTTCCATACTCAGCCAGTCATTGACATGCTTCAGCGCT 6245115 Query 311 TTCTTGTATCGGGGCCAGTTCGTTGATGGAAAACACCTTCGCCGCTTTCTCTACGTCGCC 370 | | || | ||| ||||||||| |||| ||||||| ||||||||||| ||||| || Sbjct 6245116 TCCATG-ACCGGCATCAGTTCGTTAATGGCAAACACCCGTGCCGCTTTCTCAACGTCACC 6245174 Query 371 GAAGCCACCGGAGTTATTCGGCATTACCCCCATCAGAACGGGCGGCACACGGTGCGCGGC 430 ||| ||| | | |||||| |||||||||| |||| ||||||||||||||| Sbjct 6245175 GAATGAGCCGTTGCCCTCCGGCATGGCCCCCATCAGTTGCGGCGACACACGGTGCGCGGC 6245234 Query 431 TAACAGGTCGTCGCGGGTGGC-GTCTT-TGATGCCGGTAAACTCATCCTTCGCCGCCACC 488 | | ||||| ||||| | | ||| || | || || |||||||| |||| | | Sbjct 6245235 AAGGATATCGTCACGGGTAACAGACTTGATATTCAGG--AATTCATCCTTGGCCGATATC 6245292 Query 489 TGGCTGAACGGCATAATTTG 508 || ||||| || || ||||| Sbjct 6245293 TGACTGAAAGGGATGATTTG 6245312 >seq10505 Length=1270 Score = 127 bits (140), Expect = 4e-25 Identities = 135/176 (77%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 28351 CCAATGCGGTTAACGGCTTCTGGGGATCTGCTGACTGGCTTTTCTGCCGGGATGGAAAGT 28410 ||| ||||||||||||||||||| || ||||||||||| | |||||||||| ||||| Sbjct 355 CCAGTGCGGTTAACGGCTTCTGGCGAGAGGCTGACTGGCTCCTGTGCCGGGATGAAAAGT 414 Query 28411 GGAGGCCAGTTAAACCCG--GAATTAGCCCTTTGGTTGATGGGGTTGCCGGACGAGTGGG 28468 || |||||||| |||||| | ||| ||| ||| | |||||||| || || ||||| Sbjct 415 GGCGGCCAGTTGAACCCGGCGCATT--CCCGCTGGCTTATGGGGTTACCAACCGCGTGGG 472 Query 28469 CCAGCTGCGCGCCTACGGTAATGCCATCGTTGCGCCGGTCGCGGAAGCGTTCATAG 28524 | |||||||||||||| || || ||| | | || || |||||||||||| Sbjct 473 ACGACTGCGCGCCTACGGAAACGCTATCAACGTGGAGGCGGCAAAAGCGTTCATAG 528 Score = 100 bits (110), Expect = 6e-17 Identities = 126/169 (75%), Gaps = 8/169 (5%) Strand=Plus/Plus Query 27900 GTCTTTGGGGAACAGGTTGCAAGCAAAGACGG---CCTCGCATGGCTCGACGCTGTACAG 27956 || ||||| |||||||||||||||| | | |||| ||| ||||| ||||||| Sbjct 108 GTTTTTGGTGAACAGGTTGCAAGCAGCCATGCAAACCTC---TGGTTCGACCTTGTACAG 164 Query 27957 GCTGATCTGGAAAACGCGGATTATGCCTTCGCAGGTTTCGATCTCTGCG-CTGCGGGCTT 28015 ||||| |||||| || ||| || ||||||| || | | | | || |||||||| | Sbjct 165 GCTGACCTGGAAGCCGTGGACTACGCCTTCGGGTGTGT-GCCGTTTCCGTCTGCGGGCGT 223 Query 28016 CGGTGCCCCGCACATCCGCCAGCGCCTCTTCTGGGTGGCCGACGCCGAC 28064 |||||||||||| |||||| | || | |||||||||| |||||||| Sbjct 224 CGGTGCCCCGCATATCCGCGACCGGGCGTACTGGGTGGCCTACGCCGAC 272 >seq2192 Length=16777 Score = 127 bits (140), Expect = 4e-25 Identities = 135/176 (77%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 28351 CCAATGCGGTTAACGGCTTCTGGGGATCTGCTGACTGGCTTTTCTGCCGGGATGGAAAGT 28410 ||| ||||||||||||||||||| || ||||||||||| | |||||||||| ||||| Sbjct 16424 CCAGTGCGGTTAACGGCTTCTGGCGAGAGGCTGACTGGCTCCTGTGCCGGGATGAAAAGT 16365 Query 28411 GGAGGCCAGTTAAACCCGGA--ATTAGCCCTTTGGTTGATGGGGTTGCCGGACGAGTGGG 28468 || |||||||| ||||||| ||| ||| ||| | |||||||| || || ||||| Sbjct 16364 GGCGGCCAGTTGAACCCGGCGCATT--CCCGCTGGCTTATGGGGTTACCAACCGCGTGGG 16307 Query 28469 CCAGCTGCGCGCCTACGGTAATGCCATCGTTGCGCCGGTCGCGGAAGCGTTCATAG 28524 | |||||||||||||| || || ||| | | || || |||||||||||| Sbjct 16306 ACGACTGCGCGCCTACGGAAACGCTATCAACGTGGAGGCGGCAAAAGCGTTCATAG 16251 Score = 100 bits (110), Expect = 6e-17 Identities = 126/169 (75%), Gaps = 8/169 (5%) Strand=Plus/Minus Query 27900 GTCTTTGGGGAACAGGTTGCAAGCAAAGACGG---CCTCGCATGGCTCGACGCTGTACAG 27956 || ||||| |||||||||||||||| | | |||| ||| ||||| ||||||| Sbjct 16671 GTTTTTGGTGAACAGGTTGCAAGCAGCCATGCAAACCTC---TGGTTCGACCTTGTACAG 16615 Query 27957 GCTGATCTGGAAAACGCGGATTATGCCTTCGCAGGTTTCGATCTCTGCG-CTGCGGGCTT 28015 ||||| |||||| || ||| || ||||||| || | | | | || |||||||| | Sbjct 16614 GCTGACCTGGAAGCCGTGGACTACGCCTTCGGGTGTGT-GCCGTTTCCGTCTGCGGGCGT 16556 Query 28016 CGGTGCCCCGCACATCCGCCAGCGCCTCTTCTGGGTGGCCGACGCCGAC 28064 |||||||||||| |||||| | || | |||||||||| |||||||| Sbjct 16555 CGGTGCCCCGCATATCCGCGACCGGGCGTACTGGGTGGCCTACGCCGAC 16507 >seq81 Length=1823934 Score = 120 bits (132), Expect = 7e-23 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 252 GCGTAAGGGTTGAAGCGCACCACGTCGATCCCCAGCCAGTCGTTTAACTCTTTCAG-GCT 310 ||||| ||||||||||| | ||| || || | ||||||||| || | | ||||| ||| Sbjct 1007126 GCGTAGGGGTTGAAGCGGATCACTTCCATACTCAGCCAGTCATTGACATGCTTCAGCGCT 1007185 Query 311 TTCTTGTATCGGGGCCAGTTCGTTGATGGAAAACACCTTCGCCGCTTTCTCTACGTCGCC 370 | | || | ||| ||||||||| |||| ||||||| ||||||||||| ||||| || Sbjct 1007186 TCCATG-ACCGGCATCAGTTCGTTAATGGCAAACACCCGTGCCGCTTTCTCAACGTCACC 1007244 Query 371 GAAGCCACCGGAGTTATTCGGCATTACCCCCATCAGAACGGGCGGCACACGGTGCGCGGC 430 ||| ||| | | |||||| |||||||||| |||| ||||||||||||||| Sbjct 1007245 GAATGAGCCGTTGCCCTCCGGCATGGCCCCCATCAGTTGCGGCGACACACGGTGCGCGGC 1007304 Query 431 TAACAGGTCGTCGCGGGT 448 | | ||||| ||||| Sbjct 1007305 AAGGATATCGTCACGGGT 1007322 >seq8600 Length=1434 Score = 84.2 bits (92), Expect = 5e-12 Identities = 209/315 (66%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 21121 TATACGGTTGACGAGATCGGACACGCTGGCCCGCCTGACCAGCTAACGATCAGTGCCAGA 21180 ||||| ||||| || ||| || | | |||||| || ||| | |||| || | Sbjct 1102 TATACCGTTGATGAAGTCGCCCATGAAGACCCGCCGGATGTGCTCAACATCACGGCACGT 1161 Query 21181 AGCGCAGATTTCCGCGATACCTTCAACGTGAAAAGGGAATATAGCTGGCACGATATTACC 21240 ||||||||||| || ||| || || || || | || |||||||||| | || Sbjct 1162 AGCGCAGATTTTCGTGATGAATTTAATGTCAAGCGTGAGGTGTCCTGGCACGATGTGACT 1221 Query 21241 GTGGGGGATGTGGTCGCCAGC-ATTGCCAGCCGCTACGATCTGCGTGCGGGTGTCAGCGA 21299 || | | |||||| | | || || || ||| | || ||| ||| ||||||| Sbjct 1222 GTTGAGCGTGTGGT-GTCTGCTATCGCGCACCGTTGCGGGCTGAAAGCGCAAATCAGCGA 1280 Query 21300 AGAACTGGCGAAGATTGAGATAGACCACGCCGATCAGACGAGTGAATCAGATATCAGCTT 21359 ||| ||| ||||| || ||||||||||| ||||| ||| |||| || Sbjct 1281 CATGCTGATGAACATTGACATTGACCACGCCGACCAGACACAAGAAAGCAATATGTCGTT 1340 Query 21360 CTTAACGCGCATGGCCGAAATGCTGGGCGCGGTGGCAACCATTAAAAACGGTATGCTTCT 21419 ||||| || ||| | ||||||||||||||| | || || |||||||||| | || Sbjct 1341 TTTAACCCGAATGCCAGAAATGCTGGGCGCGATTGCCACGGTTAAAAACGGAGCATTGCT 1400 Query 21420 GTTTATCACGCCGGG 21434 ||||||| ||| || Sbjct 1401 GTTTATCCTGCCCGG 1415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107086166622774