Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_029120.1
Length=60875
Score E
Sequences producing significant alignments: (Bits) Value
seq3892 179 1e-40
seq3409 163 1e-35
seq1599 125 3e-24
seq1209 125 3e-24
seq4809 123 1e-23
seq5862 122 3e-23
seq1653 122 3e-23
seq1577 118 4e-22
>seq3892
Length=6556
Score = 179 bits (198), Expect = 1e-40
Identities = 225/307 (73%), Gaps = 4/307 (1%)
Strand=Plus/Minus
Query 59572 TTCTTTTCGCACTCGATGAAGTATCGGCGTATCTGGCGGCCTTTTTCGTTACGTTCAACC 59631
||||| || || ||||||||||| || || | ||| ||||||| ||||| || ||||||
Sbjct 3490 TTCTTCTCACATTCGATGAAGTAGCGTCGCACCTGACGGCCTTGCTCGTTGCGCTCAACC 3431
Query 59632 ATCGCAAGCTCTTTGGCTGTGTCGAGGGTGAGGTGGTAATCCTTGCGGCGGCGGCCTGGA 59691
||||| || ||||| || |||||||||||||| ||||| ||||| | ||| || || |
Sbjct 3430 ATCGCCAGTTCTTTAGCAGTGTCGAGGGTGAGCTGGTAGTCCTTTCTGCGACGCCCGACA 3371
Query 59692 GTTTTCGCCAAATTTGGCGAAAATAGAATGTAGTCTAAATTTTCTACGAATCCATACTCG 59751
||||||||| ||| ||||||||||| |||||||||| |||| | || || |||||
Sbjct 3370 GTTTTCGCCGAATCTGGCGAAAATACGATGTAGTCTAGATTTGCGGTAAACCCGTACTC- 3312
Query 59752 TTTAGCTTGG--CCCGTATCCAGTTAGAAAAATCTTTACCTACCTCTAAAAATCCATGCA 59809
| | || | | || |||||||| ||||| || ||||| | ||||| ||| |
Sbjct 3311 -TGAAATTCGCTCACGAATCCAGTTGGAAAAGTCGCGGCCTACATTCAAAAAAGTATGAA 3253
Query 59810 AATCACGCGCGTTCACCAGAAGCGTAGGTTCATTTGAGATTGTACCTTCAAACACAGGGA 59869
||| || || || ||||| | | || |||| || || || | ||| |||||||
Sbjct 3252 GATCGCGAGCATTACAAAGAAGAATGGAATCGTTTGCAATGGTGCCATTAAAAACAGGGA 3193
Query 59870 TGAGTTG 59876
|||| ||
Sbjct 3192 TGAGCTG 3186
>seq3409
Length=8325
Score = 163 bits (180), Expect = 1e-35
Identities = 267/382 (70%), Gaps = 2/382 (1%)
Strand=Plus/Plus
Query 25599 GCATACCGTGATGGTGTGGGTATCTGGACCATCTGCCGTGGAGCCACCCGGGTGGATGGT 25658
|| || | ||| || | || |||||||| || ||| |||| | || ||||| |||||
Sbjct 3032 GCTTATCCTGACGGCGGCGGCATCTGGACGATTTGCGGTGGCGTGACACGGGTAGATGGC 3091
Query 25659 AAGCCTGTGATTCCTGGCATGAAGCTGTCGAAGGAAAAATGCGACCGGGTTAACGCTATC 25718
||||| || | |||||||||||| | | | || | | || | ||
Sbjct 3092 AAGCCGGTAGTGAAGGGCATGAAGCTGACCGCCGGGCAGTGTGCAAAGATTGATGCCGCA 3151
Query 25719 GAACGGGATAAGGCGCTGGCATGGGTGGCGAAGAACATCAGAGTGCCACTGACTGAACCC 25778
|||| | | |||||||| | ||||||| ||| | | |||||| || ||||| |
Sbjct 3152 GAACAGCAAAAGGCGCTCGATTGGGTGGATCGCAACGTTAAAGTGCCGCTCACTGAGACT 3211
Query 25779 CAGAAAGCGGGTATTGCGTCATTCTGTCCTTACAACATTGGCCCCGGTAAGTGTTTCCCG 25838
||||||| || ||||| ||||| ||||| | || || || |||||||| || ||| |
Sbjct 3212 CAGAAAGTCGGCATTGCCTCATTTTGTCCGTGGAATATCGGTCCCGGTAACTGCTTCACC 3271
Query 25839 TCGACGTTTTATAAACGAATT-AATGCAGGTGATCGAAAAGGTGCCTGCGAAGCGATTCG 25897
|| ||||| || | |||| ||||| || |||| | ||||||||| ||| ||||
Sbjct 3272 TCAACGTTCTACCG-CAAATTGAATGCCGGCGATCTCATTGGTGCCTGCAAAGAGATTAA 3330
Query 25898 CTGGTGGATTAAGGACGGTGGCAGAGACTGCCGTATCCGCTCAAATAATTGCTACGGTCA 25957
| |||||| |||||| |||| ||| |||||||||||| | ||||| || ||||| ||
Sbjct 3331 GCGCTGGATTTGGGACGGAGGCAAAGATTGCCGTATCCGCGCCAATAACTGTTACGGGCA 3390
Query 25958 GGTATCAAGACGTGACCAGGAG 25979
| || | | ||||||||||||
Sbjct 3391 GATAGCGCGGCGTGACCAGGAG 3412
Score = 136 bits (150), Expect = 2e-27
Identities = 134/170 (79%), Gaps = 6/170 (4%)
Strand=Plus/Minus
Query 60412 TGACTGGTCATGATGACCTCCTTGTAAGTTTAGTTAGCTCAACCAGTTAGTAGCTGGTTG 60471
||||| | ||| | | ||||||| ||||||||| ||||||||||||||||| |
Sbjct 1109 TGACTTGGCATAAAG-CCTCCTTACTAGTTTAGTTTCGATTACCAGTTAGTAGCTGGTAG 1051
Query 60472 GTCGGGTGTCAACTGAGCCTTACAAGAAGCTCTGGGCATATTCCCCTTACGGGTATTGTA 60531
|||| |||||||||| || ||| | ||||||||||||||||||| || ||||||||
Sbjct 1050 C-CGGGCGTCAACTGAGTCTAGTAAGCAACTCTGGGCATATTCCCCTTGCGAGTATTGTA 992
Query 60532 TTACGCCTCTCCACCCGACCTTTGTACGGATGTGACTATGCCGCATTACG 60581
||||||||||||||||| |||| ||||||||| || ||| |||||
Sbjct 991 TTACGCCTCTCCACCCGGCCTT----CGGATGTGATTACGCCTTTTTACG 946
Score = 134 bits (148), Expect = 5e-27
Identities = 303/450 (67%), Gaps = 9/450 (2%)
Strand=Plus/Plus
Query 26296 ATGACCGTGCCGTTTCACGGCGATTCTCTTTATGTGGTTAACCATAACGGCGAACCATAC 26355
|| ||||| |||||||| || || | || ||||| |||||| ||||| ||||| ||
Sbjct 5128 ATCACCGTTCCGTTTCATGGAAATGCCCTGTATGTCGTTAACTGTAACGATGAACCCTAT 5187
Query 26356 GTTCCCATGAAACCTGTCGTTGCGGGGATGGGGCTGGCCTGGCAATCACAGTTGGCTAAG 26415
|| ||| || || ||| ||| |||||| |||| | || ||| || ||||
Sbjct 5188 ACCCCGATGCGCCCAATCATTGAGGGTATGGGGTTGGCATACCAGGGTCAGGCGGGTAAG 5247
Query 26416 TTAAGACAGCGTTTTGCGTCAACTA--TAACGGAAATCGTTATGGTTGCTGAGGATGGGA 26473
|| | | || ||||| ||| | | ||||||| | || | | | | |||
Sbjct 5248 TTGAAATCTCGCTTTGC--CAAGGGGGTCATGGAAATCATGATCCCTACCCAAGGTGGCC 5305
Query 26474 AACGACGCAATATGGTGTCCCTGCCGCTTCGAAAACTTGCAGGCTGGTTACAAACCATCA 26533
|| | || ||| | | || | || || ||| | || | |||| | | |||
Sbjct 5306 CACAA---AAAATGCTTTGTCTACAACTCCGCAAATTGGCTGCCTGGCTGGCCAGTATCC 5362
Query 26534 ATCCCAACAAAGTAAAACCCGAAATCCGCGGCAAGGTAATCCAGTATCAGGAAGAGTGTG 26593
| || || ||||| || || |||| |||| ||| || | ||||||||||| ||||| |
Sbjct 5363 AGCCGAATAAAGTTAAGCCAGAAAGTCGCGACAAAGTGGTTCAGTATCAGGAGGAGTGCG 5422
Query 26594 ACGATGTTCTCTATGAATACTGGACGAAGGGTTTTGTCGTTAATCCCCGTCGAATG-AGT 26652
| || || ||||||||||||||||| || ||| || |||||||| | | | ||
Sbjct 5423 ATGACGTGCTCTATGAATACTGGACAAAAGGTCAGGTTACCAATCCCCG-CAAGCGCAGC 5481
Query 26653 GTGATGGAAGAACTCAATCAGGCTTGCGCTGACATGAAACGGGATAAAAACATTGCCAGT 26712
|| ||| | ||||||||| |||||||| ||| | ||| ||| ||| | |||||||
Sbjct 5482 GTCATGCAGGAACTCAATGCCGCTTGCGCCGACTTAAAAACGGACAAAGCCGTTGCCAGC 5541
Query 26713 GTGTTTGCTACCGGGCTGAATGAGTGGAAA 26742
||||||| || || |||| |||||||||
Sbjct 5542 GTGTTTGGCACGGGATTGAACGAGTGGAAA 5571
>seq1599
Length=30855
Score = 125 bits (138), Expect = 3e-24
Identities = 136/178 (76%), Gaps = 2/178 (1%)
Strand=Plus/Minus
Query 59574 CTTTTCGCACTCGATGAAGTATCGGCGTATCTGGCGGCCTTTTTCGTTACGTTCAACCAT 59633
|||||| ||||| |||||||| ||||| | ||| |||||||| ||||| | || |||||
Sbjct 20322 CTTTTCACACTCAATGAAGTAACGGCGAACCTGACGGCCTTTGTCGTTGTGCTCCACCAT 20263
Query 59634 CGCAAGCTCTTTGGCTGTGTCGAGGGTGAGGTGGTAATCCTTGCGGCGGCGGCCTGGAGT 59693
|| || |||||||||||||| |||||||||||||| ||||| | || || || ||
Sbjct 20262 TGCCAGTTCTTTGGCTGTGTCCAGGGTGAGGTGGTAGTCCTTTCTGCCTCGTCCGTGACC 20203
Query 59694 TTTCGCCAAATTTGGCGAAAATAG-AATGTAGTCTAAATTTTCTACGAATCCATACTC 59750
| | || ||| | | |||||| |||||||| |||||| ||||| ||| ||||
Sbjct 20202 TATTTCCCGATTCTG-GGAAATAGCTATGTAGTCCTGATTTTCAACGAAACCAAACTC 20146
>seq1209
Length=44547
Score = 125 bits (138), Expect = 3e-24
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 8665 GATGGCGTAGAGTTTGCTGTCAACAATACGTTTGTTGTTTGTGTCTACTGCGATTGTTGT 8724
||||||||||| |||| |||| |||||| || | ||| |||| || |||| || ||
Sbjct 6743 GATGGCGTAGATCTTGCCATCAATAATACGCTTATCGTTGGTGTTGACGGCGACGGTGGT 6684
Query 8725 TCCATCTGGTATCACGGGTTCCATGCTATCACCAGTAGCCGGAAAACAAAGCACACCAGA 8784
||||| || || | ||||||||||| || || | ||||| ||||| || || || ||
Sbjct 6683 GCCATCGGGAATAAATGGTTCCATGCTGTCGCCCTTGGCCGGGAAACAGAGTACGCCGGA 6624
Query 8785 ACCATCACTGTTAGCTCCGACACGGCGCAAGGTTGCTTTTGAGAAGCGTAATTTAAAACC 8844
||||| || || ||||| ||||| ||||| | ||| || || || || ||||| ||
Sbjct 6623 GCCATCGGAATTCGCACCGACGCGGCGTAAGGTCGATTTGGAAAACCGCAACTTAAACCC 6564
Query 8845 ATTATGATCTTC 8856
|||||||||||
Sbjct 6563 GTTATGATCTTC 6552
>seq4809
Length=3389
Score = 123 bits (136), Expect = 1e-23
Identities = 215/305 (70%), Gaps = 17/305 (6%)
Strand=Plus/Plus
Query 17098 AATATACCTGTGGTGACTACAGAGCTTCTTGCC-AGCTTATATGGCACAGAACCAGATTA 17156
||||| ||||| | ||||| |||||| | || ||||| || |||||||| |||| |
Sbjct 822 AATATTCCTGTTATTACTACTGAGCTTTTAGCTGAGCTT-TACGGCACAGAGCCAGTTAG 880
Query 17157 CATCCGAAAAAATTTCAATCGGAATTCTGGACGATTTGTTATCGGTAAGCACTACTTTTT 17216
||||| |||||| ||| || ||| ||| || || ||| || ||||| |||||
Sbjct 881 AATCCGCAAAAATCACAACCGTAATGCTGATCGGTTCGTTGATGGCAAGCA----TTTTT 936
Query 17217 ACTTGAGAATGAGGAGTTGC---GCGAATTTAAGCACAGCATGTCTTTAAGACCTTCTGT 17273
|| | || | | | | | ||||| || || |||||||||||| | ||
Sbjct 937 ACAAAACAACCGGAACTGACCTTGATAATTTGAG---AG--TGTCTTTAAGACACT-TGC 990
Query 17274 GAAAATCGCCCGTAACGTTCGCTCCCTCATCCTCTGGACAGAACGCGGAGCAGCCCGTCA 17333
|| ||| ||| ||| |||| ||||| ||||||||||| |||||||| || | ||
Sbjct 991 AAATATCACCCAAAAC--TCGCAGTCTCATTCTCTGGACAGAGCGCGGAGCCGCTAGGCA 1048
Query 17334 CGCAAAAATGCTCGAAACTGATCAGGCATGGGAAGTGTTCGAAAAACTGGAAGACTGCTA 17393
|| || ||||||||||| ||||| | ||||||||| ||||| | ||| |||| || ||
Sbjct 1049 TGCCAAGATGCTCGAAACCGATCAAGAATGGGAAGTATTCGAGCAGCTGAAAGATTGTTA 1108
Query 17394 TTTCA 17398
||||
Sbjct 1109 CTTCA 1113
>seq5862
Length=3465
Score = 122 bits (134), Expect = 3e-23
Identities = 211/304 (69%), Gaps = 12/304 (4%)
Strand=Plus/Plus
Query 17098 AATATACCTGTGGTGACTACAGAGCTTCTTGCCAGCTTATATGGCACAGAACCAGATTAC 17157
|| ||||| || | ||||| ||| | || || | ||| ||||| | ||| | |
Sbjct 1732 AACATACCGGTTATTACTACTGAGTTACTGGCTAACTTGTATGGTGCCGAAGTGAACAGC 1791
Query 17158 ATCCGAAAAAATTTCAATCGGAATTCTGGACGATTTGTTATCGGTAAGCACTACTTTTTA 17217
|||| | |||||||||| || ||| | | |||| ||| |||||||| ||||| |
Sbjct 1792 ATCCAACAAAATTTCAAGCGCAATGTGGAAAGATTCATTAATGGTAAGCAT--CTTTTCA 1849
Query 17218 --CTTGAGAATGAGGAGTTGCGCGAATTTAAGCACAGCATGTCTTTAAGACCTTCTGT-G 17274
|| || || ||| | | |||| ||| |||| || | ||| | || || |
Sbjct 1850 AGCTGGAAGGGGATGAGCTTAGGGAATACAAGAACAGGCTGACAGAAAGTCAGTCAGTTG 1909
Query 17275 AAAATCGCCCGTAACGTTCGCTCCCTCATCCTCTGGACAGAACGCGGAGCAGCCCGTCAC 17334
||| | | || ||| ||||||||| |||||||| ||||||||||| | |||
Sbjct 1910 CAAAACACACG-------CGCAGCCTCATCCTTTGGACAGAGCGCGGAGCAGCAAGACAC 1962
Query 17335 GCAAAAATGCTCGAAACTGATCAGGCATGGGAAGTGTTCGAAAAACTGGAAGACTGCTAT 17394
|| || |||||||| || ||| ||||||||||||| ||||| |||||||||| |||||
Sbjct 1963 GCCAAGATGCTCGAGACAGATAAGGCATGGGAAGTATTCGAGCAACTGGAAGATTGCTAC 2022
Query 17395 TTCA 17398
||||
Sbjct 2023 TTCA 2026
>seq1653
Length=29478
Score = 122 bits (134), Expect = 3e-23
Identities = 144/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 91 CAAATTTGGGACATCGTCACTCAATATGTCGTCAATTTTCCTCGCGTGCTCTGTCAAATG 150
|| ||| | ||||||| | ||| | ||||||||||| || || || || || || ||
Sbjct 586 CAGATTAGTGACATCGCCCGCCAAGACTTCGTCAATTTTTCTGGCATGTTCGGTTAAGTG 527
Query 151 ATTAGGTGCAAGGTGTGCGTACCTACGCACCATTTCGATAGACTCCCAGCCGCCCATTTC 210
| |||| | || ||||| | | ||||| |||||| ||||||||| ||||||||
Sbjct 526 AACCGGTGATAAATGAGCGTAACGTTGTACCATCTCGATACTCTCCCAGCCCCCCATTTC 467
Query 211 CTGAAGTACTGACAGCGGTACACCTGACTGAATTAACCAACTGGCCCAAGTGTGGCGGAG 270
|| | | | ||||| || || |||||||||| ||||||||| ||||| || || || ||
Sbjct 466 TTGCAATGCAGACAGGGGCACGCCTGACTGAACTAACCAACTTGCCCAGGTATGTCGCAG 407
Query 271 GTCATGAAAACGGAA 285
|||||||| | |||
Sbjct 406 ATCATGAAATCTGAA 392
>seq1577
Length=31499
Score = 118 bits (130), Expect = 4e-22
Identities = 227/329 (69%), Gaps = 18/329 (5%)
Strand=Plus/Plus
Query 59572 TTCTTTTCGCACTCGATGAAGTATCGGCGTATCTGGCGGCCTTTTTCGTTACGTTCAACC 59631
||||| || || ||||||||||| || || | ||| ||||||| ||||| || ||||||
Sbjct 21929 TTCTTCTCACATTCGATGAAGTAGCGTCGCACCTGACGGCCTTGCTCGTTGCGCTCAACC 21988
Query 59632 ATCGCAAGCTCTTTGGCTGTGTCGAGGGTGAGGTGGTAATCCTTGCGGC------GGCGG 59685
||||| |||||||| ||||||| |||||||| ||||| ||||||| | |
Sbjct 21989 ATCGCCAGCTCTTTTGCTGTGTTCAGGGTGAGATGGTAGTCCTTGCTTCTTCTATCTCCA 22048
Query 59686 CCTGGAGT-------TTTCGCCAAATTTGGCGAAAATAGAATGTAGTCTAAATTTTCTAC 59738
||| | || ||| || | |||| | || | ||||||||| ||||| |
Sbjct 22049 CCTCGTGTATTTTTGATTCCCCCACTTTGATG-AACCAAAATGTAGTCCGCGTTTTCGAT 22107
Query 59739 GAATCCATACTCGTTTAGCTTGGCCCGT-ATCCAGTTAGAAAAATCTTTACCTACCTCTA 59797
|||||| |||||| || | || | | ||||| | |||||||| | || || |
Sbjct 22108 GAATCCGTACTCG-GTAACGCGGTTCTTAATCCATGTTGAAAAATCACGGCGAACATCGA 22166
Query 59798 AAAATCCATGCAAATCACGCGCGTTCAC-CAGAAGCGTAGGTTCATTTGAGATTGTACCT 59856
||| |||||| | |||||| |||| ||| || || | ||| || || || || ||
Sbjct 22167 GGAATTCATGCAGCTTACGCGC-ATCACACAGTAGAGTTGCTTCGTTGGAAATAGTGCCG 22225
Query 59857 TCAAACACAGGGATGAGTTGAGTGGTCAT 59885
| || || ||||| || ||| |||||||
Sbjct 22226 TTGAAAACGGGGATAAGCTGATTGGTCAT 22254
Score = 91.5 bits (100), Expect = 6e-14
Identities = 107/142 (75%), Gaps = 6/142 (4%)
Strand=Plus/Minus
Query 16836 ATACTCTGCGTCAGGTGCTCAAAACACCTTAGCAAGTAGCGGTTACCGCGCCCGACAGAC 16895
||| || || |||||||| |||||||||| | ||||||| ||||| ||||||||||
Sbjct 22461 ATAGTCCGCTACAGGTGCTGAAAACACCTTTTC--GTAGCGGAAACCGCACCCGACAGAC 22404
Query 16896 ATGCGGtttttttGTGTCCAGTCTTCTTGGTTTATGACCGGGCGTGCGGCTAATACAATA 16955
|||||| |||||| ||||| | || |||| ||| | ||| ||| |||| || |
Sbjct 22403 ATGCGGATTTTTTACGTCCA---TATTTCAGATATGGCCGAGTGTG-GGCGAATAAAAGA 22348
Query 16956 CCAGCAATGGGAATATGCCCGC 16977
|| | || ||||||| ||||||
Sbjct 22347 CCTGAAAAGGGAATAAGCCCGC 22326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 194640169664178
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |