Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq3892 179 1e-40 seq3409 163 1e-35 seq1599 125 3e-24 seq1209 125 3e-24 seq4809 123 1e-23 seq5862 122 3e-23 seq1653 122 3e-23 seq1577 118 4e-22 >seq3892 Length=6556 Score = 179 bits (198), Expect = 1e-40 Identities = 225/307 (73%), Gaps = 4/307 (1%) Strand=Plus/Minus Query 59572 TTCTTTTCGCACTCGATGAAGTATCGGCGTATCTGGCGGCCTTTTTCGTTACGTTCAACC 59631 ||||| || || ||||||||||| || || | ||| ||||||| ||||| || |||||| Sbjct 3490 TTCTTCTCACATTCGATGAAGTAGCGTCGCACCTGACGGCCTTGCTCGTTGCGCTCAACC 3431 Query 59632 ATCGCAAGCTCTTTGGCTGTGTCGAGGGTGAGGTGGTAATCCTTGCGGCGGCGGCCTGGA 59691 ||||| || ||||| || |||||||||||||| ||||| ||||| | ||| || || | Sbjct 3430 ATCGCCAGTTCTTTAGCAGTGTCGAGGGTGAGCTGGTAGTCCTTTCTGCGACGCCCGACA 3371 Query 59692 GTTTTCGCCAAATTTGGCGAAAATAGAATGTAGTCTAAATTTTCTACGAATCCATACTCG 59751 ||||||||| ||| ||||||||||| |||||||||| |||| | || || ||||| Sbjct 3370 GTTTTCGCCGAATCTGGCGAAAATACGATGTAGTCTAGATTTGCGGTAAACCCGTACTC- 3312 Query 59752 TTTAGCTTGG--CCCGTATCCAGTTAGAAAAATCTTTACCTACCTCTAAAAATCCATGCA 59809 | | || | | || |||||||| ||||| || ||||| | ||||| ||| | Sbjct 3311 -TGAAATTCGCTCACGAATCCAGTTGGAAAAGTCGCGGCCTACATTCAAAAAAGTATGAA 3253 Query 59810 AATCACGCGCGTTCACCAGAAGCGTAGGTTCATTTGAGATTGTACCTTCAAACACAGGGA 59869 ||| || || || ||||| | | || |||| || || || | ||| ||||||| Sbjct 3252 GATCGCGAGCATTACAAAGAAGAATGGAATCGTTTGCAATGGTGCCATTAAAAACAGGGA 3193 Query 59870 TGAGTTG 59876 |||| || Sbjct 3192 TGAGCTG 3186 >seq3409 Length=8325 Score = 163 bits (180), Expect = 1e-35 Identities = 267/382 (70%), Gaps = 2/382 (1%) Strand=Plus/Plus Query 25599 GCATACCGTGATGGTGTGGGTATCTGGACCATCTGCCGTGGAGCCACCCGGGTGGATGGT 25658 || || | ||| || | || |||||||| || ||| |||| | || ||||| ||||| Sbjct 3032 GCTTATCCTGACGGCGGCGGCATCTGGACGATTTGCGGTGGCGTGACACGGGTAGATGGC 3091 Query 25659 AAGCCTGTGATTCCTGGCATGAAGCTGTCGAAGGAAAAATGCGACCGGGTTAACGCTATC 25718 ||||| || | |||||||||||| | | | || | | || | || Sbjct 3092 AAGCCGGTAGTGAAGGGCATGAAGCTGACCGCCGGGCAGTGTGCAAAGATTGATGCCGCA 3151 Query 25719 GAACGGGATAAGGCGCTGGCATGGGTGGCGAAGAACATCAGAGTGCCACTGACTGAACCC 25778 |||| | | |||||||| | ||||||| ||| | | |||||| || ||||| | Sbjct 3152 GAACAGCAAAAGGCGCTCGATTGGGTGGATCGCAACGTTAAAGTGCCGCTCACTGAGACT 3211 Query 25779 CAGAAAGCGGGTATTGCGTCATTCTGTCCTTACAACATTGGCCCCGGTAAGTGTTTCCCG 25838 ||||||| || ||||| ||||| ||||| | || || || |||||||| || ||| | Sbjct 3212 CAGAAAGTCGGCATTGCCTCATTTTGTCCGTGGAATATCGGTCCCGGTAACTGCTTCACC 3271 Query 25839 TCGACGTTTTATAAACGAATT-AATGCAGGTGATCGAAAAGGTGCCTGCGAAGCGATTCG 25897 || ||||| || | |||| ||||| || |||| | ||||||||| ||| |||| Sbjct 3272 TCAACGTTCTACCG-CAAATTGAATGCCGGCGATCTCATTGGTGCCTGCAAAGAGATTAA 3330 Query 25898 CTGGTGGATTAAGGACGGTGGCAGAGACTGCCGTATCCGCTCAAATAATTGCTACGGTCA 25957 | |||||| |||||| |||| ||| |||||||||||| | ||||| || ||||| || Sbjct 3331 GCGCTGGATTTGGGACGGAGGCAAAGATTGCCGTATCCGCGCCAATAACTGTTACGGGCA 3390 Query 25958 GGTATCAAGACGTGACCAGGAG 25979 | || | | |||||||||||| Sbjct 3391 GATAGCGCGGCGTGACCAGGAG 3412 Score = 136 bits (150), Expect = 2e-27 Identities = 134/170 (79%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 60412 TGACTGGTCATGATGACCTCCTTGTAAGTTTAGTTAGCTCAACCAGTTAGTAGCTGGTTG 60471 ||||| | ||| | | ||||||| ||||||||| ||||||||||||||||| | Sbjct 1109 TGACTTGGCATAAAG-CCTCCTTACTAGTTTAGTTTCGATTACCAGTTAGTAGCTGGTAG 1051 Query 60472 GTCGGGTGTCAACTGAGCCTTACAAGAAGCTCTGGGCATATTCCCCTTACGGGTATTGTA 60531 |||| |||||||||| || ||| | ||||||||||||||||||| || |||||||| Sbjct 1050 C-CGGGCGTCAACTGAGTCTAGTAAGCAACTCTGGGCATATTCCCCTTGCGAGTATTGTA 992 Query 60532 TTACGCCTCTCCACCCGACCTTTGTACGGATGTGACTATGCCGCATTACG 60581 ||||||||||||||||| |||| ||||||||| || ||| ||||| Sbjct 991 TTACGCCTCTCCACCCGGCCTT----CGGATGTGATTACGCCTTTTTACG 946 Score = 134 bits (148), Expect = 5e-27 Identities = 303/450 (67%), Gaps = 9/450 (2%) Strand=Plus/Plus Query 26296 ATGACCGTGCCGTTTCACGGCGATTCTCTTTATGTGGTTAACCATAACGGCGAACCATAC 26355 || ||||| |||||||| || || | || ||||| |||||| ||||| ||||| || Sbjct 5128 ATCACCGTTCCGTTTCATGGAAATGCCCTGTATGTCGTTAACTGTAACGATGAACCCTAT 5187 Query 26356 GTTCCCATGAAACCTGTCGTTGCGGGGATGGGGCTGGCCTGGCAATCACAGTTGGCTAAG 26415 || ||| || || ||| ||| |||||| |||| | || ||| || |||| Sbjct 5188 ACCCCGATGCGCCCAATCATTGAGGGTATGGGGTTGGCATACCAGGGTCAGGCGGGTAAG 5247 Query 26416 TTAAGACAGCGTTTTGCGTCAACTA--TAACGGAAATCGTTATGGTTGCTGAGGATGGGA 26473 || | | || ||||| ||| | | ||||||| | || | | | | ||| Sbjct 5248 TTGAAATCTCGCTTTGC--CAAGGGGGTCATGGAAATCATGATCCCTACCCAAGGTGGCC 5305 Query 26474 AACGACGCAATATGGTGTCCCTGCCGCTTCGAAAACTTGCAGGCTGGTTACAAACCATCA 26533 || | || ||| | | || | || || ||| | || | |||| | | ||| Sbjct 5306 CACAA---AAAATGCTTTGTCTACAACTCCGCAAATTGGCTGCCTGGCTGGCCAGTATCC 5362 Query 26534 ATCCCAACAAAGTAAAACCCGAAATCCGCGGCAAGGTAATCCAGTATCAGGAAGAGTGTG 26593 | || || ||||| || || |||| |||| ||| || | ||||||||||| ||||| | Sbjct 5363 AGCCGAATAAAGTTAAGCCAGAAAGTCGCGACAAAGTGGTTCAGTATCAGGAGGAGTGCG 5422 Query 26594 ACGATGTTCTCTATGAATACTGGACGAAGGGTTTTGTCGTTAATCCCCGTCGAATG-AGT 26652 | || || ||||||||||||||||| || ||| || |||||||| | | | || Sbjct 5423 ATGACGTGCTCTATGAATACTGGACAAAAGGTCAGGTTACCAATCCCCG-CAAGCGCAGC 5481 Query 26653 GTGATGGAAGAACTCAATCAGGCTTGCGCTGACATGAAACGGGATAAAAACATTGCCAGT 26712 || ||| | ||||||||| |||||||| ||| | ||| ||| ||| | ||||||| Sbjct 5482 GTCATGCAGGAACTCAATGCCGCTTGCGCCGACTTAAAAACGGACAAAGCCGTTGCCAGC 5541 Query 26713 GTGTTTGCTACCGGGCTGAATGAGTGGAAA 26742 ||||||| || || |||| ||||||||| Sbjct 5542 GTGTTTGGCACGGGATTGAACGAGTGGAAA 5571 >seq1599 Length=30855 Score = 125 bits (138), Expect = 3e-24 Identities = 136/178 (76%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 59574 CTTTTCGCACTCGATGAAGTATCGGCGTATCTGGCGGCCTTTTTCGTTACGTTCAACCAT 59633 |||||| ||||| |||||||| ||||| | ||| |||||||| ||||| | || ||||| Sbjct 20322 CTTTTCACACTCAATGAAGTAACGGCGAACCTGACGGCCTTTGTCGTTGTGCTCCACCAT 20263 Query 59634 CGCAAGCTCTTTGGCTGTGTCGAGGGTGAGGTGGTAATCCTTGCGGCGGCGGCCTGGAGT 59693 || || |||||||||||||| |||||||||||||| ||||| | || || || || Sbjct 20262 TGCCAGTTCTTTGGCTGTGTCCAGGGTGAGGTGGTAGTCCTTTCTGCCTCGTCCGTGACC 20203 Query 59694 TTTCGCCAAATTTGGCGAAAATAG-AATGTAGTCTAAATTTTCTACGAATCCATACTC 59750 | | || ||| | | |||||| |||||||| |||||| ||||| ||| |||| Sbjct 20202 TATTTCCCGATTCTG-GGAAATAGCTATGTAGTCCTGATTTTCAACGAAACCAAACTC 20146 >seq1209 Length=44547 Score = 125 bits (138), Expect = 3e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 8665 GATGGCGTAGAGTTTGCTGTCAACAATACGTTTGTTGTTTGTGTCTACTGCGATTGTTGT 8724 ||||||||||| |||| |||| |||||| || | ||| |||| || |||| || || Sbjct 6743 GATGGCGTAGATCTTGCCATCAATAATACGCTTATCGTTGGTGTTGACGGCGACGGTGGT 6684 Query 8725 TCCATCTGGTATCACGGGTTCCATGCTATCACCAGTAGCCGGAAAACAAAGCACACCAGA 8784 ||||| || || | ||||||||||| || || | ||||| ||||| || || || || Sbjct 6683 GCCATCGGGAATAAATGGTTCCATGCTGTCGCCCTTGGCCGGGAAACAGAGTACGCCGGA 6624 Query 8785 ACCATCACTGTTAGCTCCGACACGGCGCAAGGTTGCTTTTGAGAAGCGTAATTTAAAACC 8844 ||||| || || ||||| ||||| ||||| | ||| || || || || ||||| || Sbjct 6623 GCCATCGGAATTCGCACCGACGCGGCGTAAGGTCGATTTGGAAAACCGCAACTTAAACCC 6564 Query 8845 ATTATGATCTTC 8856 ||||||||||| Sbjct 6563 GTTATGATCTTC 6552 >seq4809 Length=3389 Score = 123 bits (136), Expect = 1e-23 Identities = 215/305 (70%), Gaps = 17/305 (6%) Strand=Plus/Plus Query 17098 AATATACCTGTGGTGACTACAGAGCTTCTTGCC-AGCTTATATGGCACAGAACCAGATTA 17156 ||||| ||||| | ||||| |||||| | || ||||| || |||||||| |||| | Sbjct 822 AATATTCCTGTTATTACTACTGAGCTTTTAGCTGAGCTT-TACGGCACAGAGCCAGTTAG 880 Query 17157 CATCCGAAAAAATTTCAATCGGAATTCTGGACGATTTGTTATCGGTAAGCACTACTTTTT 17216 ||||| |||||| ||| || ||| ||| || || ||| || ||||| ||||| Sbjct 881 AATCCGCAAAAATCACAACCGTAATGCTGATCGGTTCGTTGATGGCAAGCA----TTTTT 936 Query 17217 ACTTGAGAATGAGGAGTTGC---GCGAATTTAAGCACAGCATGTCTTTAAGACCTTCTGT 17273 || | || | | | | | ||||| || || |||||||||||| | || Sbjct 937 ACAAAACAACCGGAACTGACCTTGATAATTTGAG---AG--TGTCTTTAAGACACT-TGC 990 Query 17274 GAAAATCGCCCGTAACGTTCGCTCCCTCATCCTCTGGACAGAACGCGGAGCAGCCCGTCA 17333 || ||| ||| ||| |||| ||||| ||||||||||| |||||||| || | || Sbjct 991 AAATATCACCCAAAAC--TCGCAGTCTCATTCTCTGGACAGAGCGCGGAGCCGCTAGGCA 1048 Query 17334 CGCAAAAATGCTCGAAACTGATCAGGCATGGGAAGTGTTCGAAAAACTGGAAGACTGCTA 17393 || || ||||||||||| ||||| | ||||||||| ||||| | ||| |||| || || Sbjct 1049 TGCCAAGATGCTCGAAACCGATCAAGAATGGGAAGTATTCGAGCAGCTGAAAGATTGTTA 1108 Query 17394 TTTCA 17398 |||| Sbjct 1109 CTTCA 1113 >seq5862 Length=3465 Score = 122 bits (134), Expect = 3e-23 Identities = 211/304 (69%), Gaps = 12/304 (4%) Strand=Plus/Plus Query 17098 AATATACCTGTGGTGACTACAGAGCTTCTTGCCAGCTTATATGGCACAGAACCAGATTAC 17157 || ||||| || | ||||| ||| | || || | ||| ||||| | ||| | | Sbjct 1732 AACATACCGGTTATTACTACTGAGTTACTGGCTAACTTGTATGGTGCCGAAGTGAACAGC 1791 Query 17158 ATCCGAAAAAATTTCAATCGGAATTCTGGACGATTTGTTATCGGTAAGCACTACTTTTTA 17217 |||| | |||||||||| || ||| | | |||| ||| |||||||| ||||| | Sbjct 1792 ATCCAACAAAATTTCAAGCGCAATGTGGAAAGATTCATTAATGGTAAGCAT--CTTTTCA 1849 Query 17218 --CTTGAGAATGAGGAGTTGCGCGAATTTAAGCACAGCATGTCTTTAAGACCTTCTGT-G 17274 || || || ||| | | |||| ||| |||| || | ||| | || || | Sbjct 1850 AGCTGGAAGGGGATGAGCTTAGGGAATACAAGAACAGGCTGACAGAAAGTCAGTCAGTTG 1909 Query 17275 AAAATCGCCCGTAACGTTCGCTCCCTCATCCTCTGGACAGAACGCGGAGCAGCCCGTCAC 17334 ||| | | || ||| ||||||||| |||||||| ||||||||||| | ||| Sbjct 1910 CAAAACACACG-------CGCAGCCTCATCCTTTGGACAGAGCGCGGAGCAGCAAGACAC 1962 Query 17335 GCAAAAATGCTCGAAACTGATCAGGCATGGGAAGTGTTCGAAAAACTGGAAGACTGCTAT 17394 || || |||||||| || ||| ||||||||||||| ||||| |||||||||| ||||| Sbjct 1963 GCCAAGATGCTCGAGACAGATAAGGCATGGGAAGTATTCGAGCAACTGGAAGATTGCTAC 2022 Query 17395 TTCA 17398 |||| Sbjct 2023 TTCA 2026 >seq1653 Length=29478 Score = 122 bits (134), Expect = 3e-23 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 91 CAAATTTGGGACATCGTCACTCAATATGTCGTCAATTTTCCTCGCGTGCTCTGTCAAATG 150 || ||| | ||||||| | ||| | ||||||||||| || || || || || || || Sbjct 586 CAGATTAGTGACATCGCCCGCCAAGACTTCGTCAATTTTTCTGGCATGTTCGGTTAAGTG 527 Query 151 ATTAGGTGCAAGGTGTGCGTACCTACGCACCATTTCGATAGACTCCCAGCCGCCCATTTC 210 | |||| | || ||||| | | ||||| |||||| ||||||||| |||||||| Sbjct 526 AACCGGTGATAAATGAGCGTAACGTTGTACCATCTCGATACTCTCCCAGCCCCCCATTTC 467 Query 211 CTGAAGTACTGACAGCGGTACACCTGACTGAATTAACCAACTGGCCCAAGTGTGGCGGAG 270 || | | | ||||| || || |||||||||| ||||||||| ||||| || || || || Sbjct 466 TTGCAATGCAGACAGGGGCACGCCTGACTGAACTAACCAACTTGCCCAGGTATGTCGCAG 407 Query 271 GTCATGAAAACGGAA 285 |||||||| | ||| Sbjct 406 ATCATGAAATCTGAA 392 >seq1577 Length=31499 Score = 118 bits (130), Expect = 4e-22 Identities = 227/329 (69%), Gaps = 18/329 (5%) Strand=Plus/Plus Query 59572 TTCTTTTCGCACTCGATGAAGTATCGGCGTATCTGGCGGCCTTTTTCGTTACGTTCAACC 59631 ||||| || || ||||||||||| || || | ||| ||||||| ||||| || |||||| Sbjct 21929 TTCTTCTCACATTCGATGAAGTAGCGTCGCACCTGACGGCCTTGCTCGTTGCGCTCAACC 21988 Query 59632 ATCGCAAGCTCTTTGGCTGTGTCGAGGGTGAGGTGGTAATCCTTGCGGC------GGCGG 59685 ||||| |||||||| ||||||| |||||||| ||||| ||||||| | | Sbjct 21989 ATCGCCAGCTCTTTTGCTGTGTTCAGGGTGAGATGGTAGTCCTTGCTTCTTCTATCTCCA 22048 Query 59686 CCTGGAGT-------TTTCGCCAAATTTGGCGAAAATAGAATGTAGTCTAAATTTTCTAC 59738 ||| | || ||| || | |||| | || | ||||||||| ||||| | Sbjct 22049 CCTCGTGTATTTTTGATTCCCCCACTTTGATG-AACCAAAATGTAGTCCGCGTTTTCGAT 22107 Query 59739 GAATCCATACTCGTTTAGCTTGGCCCGT-ATCCAGTTAGAAAAATCTTTACCTACCTCTA 59797 |||||| |||||| || | || | | ||||| | |||||||| | || || | Sbjct 22108 GAATCCGTACTCG-GTAACGCGGTTCTTAATCCATGTTGAAAAATCACGGCGAACATCGA 22166 Query 59798 AAAATCCATGCAAATCACGCGCGTTCAC-CAGAAGCGTAGGTTCATTTGAGATTGTACCT 59856 ||| |||||| | |||||| |||| ||| || || | ||| || || || || || Sbjct 22167 GGAATTCATGCAGCTTACGCGC-ATCACACAGTAGAGTTGCTTCGTTGGAAATAGTGCCG 22225 Query 59857 TCAAACACAGGGATGAGTTGAGTGGTCAT 59885 | || || ||||| || ||| ||||||| Sbjct 22226 TTGAAAACGGGGATAAGCTGATTGGTCAT 22254 Score = 91.5 bits (100), Expect = 6e-14 Identities = 107/142 (75%), Gaps = 6/142 (4%) Strand=Plus/Minus Query 16836 ATACTCTGCGTCAGGTGCTCAAAACACCTTAGCAAGTAGCGGTTACCGCGCCCGACAGAC 16895 ||| || || |||||||| |||||||||| | ||||||| ||||| |||||||||| Sbjct 22461 ATAGTCCGCTACAGGTGCTGAAAACACCTTTTC--GTAGCGGAAACCGCACCCGACAGAC 22404 Query 16896 ATGCGGtttttttGTGTCCAGTCTTCTTGGTTTATGACCGGGCGTGCGGCTAATACAATA 16955 |||||| |||||| ||||| | || |||| ||| | ||| ||| |||| || | Sbjct 22403 ATGCGGATTTTTTACGTCCA---TATTTCAGATATGGCCGAGTGTG-GGCGAATAAAAGA 22348 Query 16956 CCAGCAATGGGAATATGCCCGC 16977 || | || ||||||| |||||| Sbjct 22347 CCTGAAAAGGGAATAAGCCCGC 22326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194640169664178