Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq504 141 2e-28 seq57 141 2e-28 seq6598 93.3 1e-13 >seq504 Length=327254 Score = 141 bits (156), Expect = 2e-28 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 |||| |||| ||||||||||| | || | |||||||||||||| || ||||| || | Sbjct 214104 CTTTCTGGATATTGTAATCGGAAAGGGTGCGTCCATCTTCTAGCTGTTTGCCAGCAAAAA 214163 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | | || ||| || || || ||||| ||||| || |||||||||||| ||| ||| || Sbjct 214164 TCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTATCTTGGATCTTTGCCTTAACATTTT 214223 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 | || |||||||||| ||| || || | || || || || |||||||||||||| | | Sbjct 214224 CAATTGTGTCTGAGGGTTCAACCTCAAGGGTAATTGTTTTACCCGTCAAAGTTTTCACAA 214283 Query 225704 ACACTTGCATTTT 225716 | | |||||| || Sbjct 214284 AAATTTGCATATT 214296 >seq57 Length=2082711 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| || ||||| || ||||| |||||||| |||| ||| ||||| | | ||| | Sbjct 1619306 AGTCTGAGTACAAGATGTAGAGTTGATTCTTTCTGGATATTATAATCTGAGAGAGTGCGG 1619365 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||||||||||||||| || |||||||| | | ||||||||| || ||||| ||||| Sbjct 1619366 CCATCTTCTAGCTGCTTTCCGGCGAAGATTAACCTTTGTTGGTCTGGTGGAATTCCTTCT 1619425 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || ||||| || || ||| ||| |||||| ||||| || | ||| || || | || Sbjct 1619426 TTATCTTGAATTTTGGCCTTAACATTTTCGATAGTGTCAGATGGTTCAACTTCAAGTGTA 1619485 Query 225676 ATCGTCTTGCCCGTCAAAGTTTT 225698 || ||||| || || | ||| || Sbjct 1619486 ATGGTCTTTCCTGTAAGAGTCTT 1619508 Score = 140 bits (154), Expect = 8e-28 Identities = 165/221 (75%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| || || ||||| || | ||| |||||||| |||| |||||| || | || ||| | Sbjct 1619761 AAGCCTTAGTACAAGATGTAAAGTAGATTCTTTCTGGATATTGTAGTCAGACAGAGTGCG 1619820 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| | |||||| || || ||||| | || ||||| || || ||||||||||| Sbjct 1619821 ACCATCTTCCAACTGCTTGCCTGCAAAGATCAATCTCTGTTGATCTGGTGGAATACCTTC 1619880 Query 225615 CTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACG 225673 || ||||| || ||| || |||||| ||| || ||||| || | |||||| ||||| | Sbjct 1619881 TTTATCTTGAAT-TTTAGCTTTCACATTTTCTATCGTGTCAGACGGTTCCACTTCTAAGG 1619939 Query 225674 TGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 | || ||||| || || || || || | || | |||||| Sbjct 1619940 TAATGGTCTTTCCAGTTAAGGTCTTAACAAATATCTGCATT 1619980 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| | |||||| || ||||| |||||||| || | ||||||||| | | || | | Sbjct 1619990 AGTCTTAAGACAAGATGAAGAGTTGATTCTTTCTGAATATTGTAATCAGAAAGGGTGCGC 1620049 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||||| ||| ||||||||||| || | | ||| ||||| || || || |||||| Sbjct 1620050 CCATCTTCTAACTGTTTCCCAGCGAAAATCAACCTTTGCTGGTCAGGTGGTATTCCTTCC 1620109 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || ||||| ||||| || ||| ||| || ||||| || | ||| || || | || Sbjct 1620110 TTATCTTGAATCTTCGCTTTTACATTTTCAATTGTGTCAGAAGGTTCTACTTCAAGAGTA 1620169 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || ||||| || || | ||| || | ||| | |||||| Sbjct 1620170 ATAGTCTTTCCTGTAAGAGTCTTAACGAAGATCTGCATT 1620208 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| || ||||| || ||||| |||||||| || | ||| ||||| | | ||| | Sbjct 1620674 AGTCTGAGTACAAGATGTAGAGTAGATTCTTTCTGAATATTATAATCTGAAAGAGTGCGG 1620733 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||||| |||||| || |||||||| | || |||||||||||| ||||| ||||| Sbjct 1620734 CCATCTTCTAACTGCTTTCCGGCGAAGATTAATCTTTGTTGGTCGGGTGGAATTCCTTCT 1620793 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || || ||||| || ||| || || || || ||||| | || || || | || Sbjct 1620794 TTATCCTGGATTTTAGCCTTTACGTTCTCTATTGTATCTGACGGCTCAACTTCAAGAGTA 1620853 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || |||| ||||||| || | ||||||| Sbjct 1620854 ATAGTTTTTCCAGTCAGGGTTTTTACAAAAATTTGCATT 1620892 Score = 132 bits (146), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 |||||||| |||||||| || | || || ||||| || | || ||||| | | |||| Sbjct 1618847 CGAAGTCTAAGGACAAGATGCAATGTTGACTCTTTCTGAATGTTATAATCAGAAAGAGTT 1618906 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| | ||| ||||||||||| || | | ||| || ||||| || || ||| Sbjct 1618907 CGACCATCTTCCAACTGTTTCCCAGCGAAAATCAACCTTTGCTGATCGGGAGGGATTCCT 1618966 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| ||||| ||||| || ||| ||| || || || || | ||| || ||||| Sbjct 1618967 TCCTTATCTTGAATCTTAGCTTTTACATTTTCAATTGTATCAGAAGGTTCTACTTCTAAG 1619026 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || || |||||||| | ||| | ||||| Sbjct 1619027 GTAATCGTTTTTCCTGTTAAAGTTTTCACGAATATCTGCAT 1619067 Score = 125 bits (138), Expect = 2e-23 Identities = 163/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| | |||||| || || || | ||| ||||| || || | ||| ||||| | ||| || Sbjct 1618618 ACGCAATCTCAGTACTAGATGTAAAGTTGATTCCTTCTGAATATTATAATCTGACAAGGT 1618677 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || ||||| ||||| || | | ||| ||||| || || || || Sbjct 1618678 GCGACCATCTTCCAATTGTTTCCCTGCGAAAATCAACCTTTGCTGGTCAGGTGGTATTCC 1618737 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 |||||||||||| || ||| || |||||| ||| || ||||| || | ||| || || | Sbjct 1618738 TTCCTTGTCTTGAAT-TTTCGCTTTCACATTTTCAATAGTGTCAGATGGTTCAACTTCAA 1618796 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || ||||||||||| | || | |||||| Sbjct 1618797 GAGTAATGGTTTTTCCAGTCAAAGTTTTCACAAATATTTGCAT 1618839 Score = 118 bits (130), Expect = 3e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 ||||| || || || | ||||||||||| | || | |||||||| | |||||| ||| Sbjct 1621151 GTGGACTCCTTCTGTATATTGTAATCGGATAGGGTACGACCATCTTCCAACTGCTTTCCA 1621210 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || || || | |||||| || || || || || |||||||| ||||| || || ||| Sbjct 1621211 GCAAAAATTAATCGTTGCTGATCAGGAGGGATTCCTTCCTTATCTTGAATTTTAGCCTTT 1621270 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||| || || ||||| | || || || | || || ||||| |||||||| ||| Sbjct 1621271 ACGTTTTCAATAGTATCTGAAGGCTCAACTTCAAGAGTTATTGTCTTCCCCGTCAACGTT 1621330 Query 225697 TTTATGAACACTTGCATTTT 225716 |||| ||| | |||||||| Sbjct 1621331 TTTACGAAGATCTGCATTTT 1621350 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 ||||| ||||| || | ||||||||| | || || | |||||||| | |||||| || Sbjct 1620239 GTGGACTCTTTCTGTATATTGTAATCAGACAGTGTGCGACCATCTTCCAACTGCTTGCCT 1620298 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || ||||| | | ||||| || || ||||||||||| || ||||| || ||| || || Sbjct 1620299 GCAAAGATCAACCTCTGTTGATCTGGTGGAATACCTTCTTTATCTTGAAT-TTTAGCTTT 1620357 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 |||| ||| || || || || | ||| || ||||| ||||| || || || || || || Sbjct 1620358 CACATTTTCAATTGTATCAGATGGTTCTACTTCTAAGGTGATGGTTTTTCCGGTTAACGT 1620417 Query 225696 TTTTATGAACACTTGCAT 225713 ||| | ||| | ||||| Sbjct 1620418 TTTGACGAATATCTGCAT 1620435 >seq6598 Length=2154 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/99 (82%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 || ||||| ||||| ||||| ||||| || || ||||| || ||||| ||||| |||| | Sbjct 1713 TCTGGATGTCCAAAGAATCAAAATAAGTGCTGGTAAAGAATCGGATCTCCTCCTCCTGCT 1654 Query 370733 GGATCAAAAA-AGCTAGTATTAAAATTTCTATCAGTTAA 370770 |||||||| | || ||||||||||||| ||||||||| Sbjct 1653 GGATCAAAGAGAG---GTATTAAAATTTCGATCAGTTAA 1618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192278526116678