Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq33 134 2e-26 seq126 102 1e-16 >seq33 Length=2490231 Score = 134 bits (148), Expect = 2e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 48411 TAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAAT 48470 ||||||||||| | | ||| ||||| || ||||||| |||||| ||||| || || || Sbjct 181684 TAAGTATCTATGAGTAAACTGTACATCTCAGAGTGAACATTTTCCATTGCAATTTGGAAA 181625 Query 48471 CCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTC 48530 |||||||||||||| ||||| || | || || || || ||| | ||| | || || Sbjct 181624 CCGTAAAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTAAACCTCTCAACTAAGTTT 181565 Query 48531 TCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTT 48590 ||||| || ||||||||| |||||||| || || |||||||| |||||||| |||| Sbjct 181564 TCATTAACAATTCCATCAGAGGCAGCAAAGAAAGCCAATACATGAGAAATAAAATGTTTT 181505 Query 48591 TC 48592 || Sbjct 181504 TC 181503 Score = 109 bits (120), Expect = 8e-19 Identities = 162/225 (72%), Gaps = 5/225 (2%) Strand=Plus/Minus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 ||||||||||| ||| ||||| || || || || || ||||||| ||| | ||| | Sbjct 182650 CTTCATCTCTAGAAATCAATTCATTGCTGAAAGTAAGCCCTGGCATTAATCCTCTTTTCT 182591 Query 48223 TGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACGGCCGCAAAT 48281 | | ||||||||| ||||| |||| | ||||| || |||| |||||| || || ||||| Sbjct 182590 TTAACCAAAATATAGCCGC-AAAGCTACCAGAGAAAAATACGCCTTCCACAGCAGCAAAA 182532 Query 48282 GCGGTAAGTCTCTCTCCGTAACTGGC-TTCGTTGTG--TATCCACCGTTGTGCCCAATCA 48338 || ||| ||| ||| | || |||| || | | | ||||| ||||| ||| Sbjct 182531 GCAATAATTCTTTCTGCAAAAGTGGCAGTCTTAGAGGAGATCCATTCCAAAGCCCAGTCA 182472 Query 48339 GCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 48383 || || ||||| |||||| || || || || |||||||||||| Sbjct 182471 GCTTTTTTCTTCACACAATCCAGAGTCTCAATTGCATTAAAGAGA 182427 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 48627 TTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTC 48686 ||||| | ||| ||||||||| | |||||||| || || ||||||||||| ||||| | | Sbjct 181293 TTTGAAAGATCAACTTCTTCAACCGTCCAAAAAGACGCTTCTGCTTTTTTGTACATTTGC 181234 Query 48687 CATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAAGGATA 48746 ||||||||| ||||| ||||| || || |||||||| || || |||| ||| | | Sbjct 181233 CATATATCATGGTATTCAATTGGAAATATCACAAATCTTTTGGGGTTTTCACGAAGTAGA 181174 Query 48747 GGTTC 48751 ||||| Sbjct 181173 GGTTC 181169 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 47794 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGAGAC---ATAACTCCCATTT 47850 ||||||| || | | ||||| |||| | | ||||||| ||| || || || || Sbjct 184261 TTTAAAAATCCGCTTGTAAAGTAAAAACACTTTCTTCTTTTGACGCCATTACACCTGCTT 184202 Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910 | |||||||| || || || || || ||||| ||||| ||||||| |||||||| || Sbjct 184201 TCTGATATTCTCCAACTTTCTTTTCAAAGAAATTTGTTTTTCCTTCCAGTGATATATGTT 184142 Query 47911 CCATAAAATCAAATGGATT 47929 |||| || ||||||||||| Sbjct 184141 CCATGAAGTCAAATGGATT 184123 Score = 86.0 bits (94), Expect = 9e-12 Identities = 140/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 || ||||| ||||| || |||||||| |||||| | || ||||||||||| || | | Sbjct 182932 AGCCTATCAGCAACAAACTCTATATACTGTTTCATTAGCTCGCAATTCATTCCAATCATT 182873 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 | ||||| | || || || ||||| || | || ||| || ||||| | ||||| Sbjct 182872 TCTACTGGCAAGGCTTCTGTGAGAAATTCCTTCTCAATAACCACTGCATCTTCAATTATT 182813 Query 48090 GATGTTACCGTTTCCTCACTTGGTGG---ATACAACAA-ATGTTTAAACATTAAACATGC 48145 || || | || ||| ||||| | | ||||| |||||| ||||| | || || Sbjct 182812 GAGGTGA---TTCTCTC-TTTGGTCGGTTTTTGAACAAGATGTTTGAACATAAGGCAGGC 182757 Query 48146 AAAATCACAATGAAGACC 48163 |||||||||||| ||||| Sbjct 182756 AAAATCACAATGTAGACC 182739 >seq126 Length=1333976 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||||||||| || | ||| |||| | || || || ||||| | || Sbjct 1329714 TCCACCCGTAGAAATGCATAGAAGTTAATTTTCCATAATTTGGTTCAGCAATATGTACAT 1329773 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | || || ||||||||| || ||||||||||| || |||||||||| || || | Sbjct 1329774 TTAAGGATTGTGATTGATCGATAAATGCTCCTCTATCTGCTGCCATTTTTAATATAGTTT 1329833 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | ||||||||| | |||||| ||| ||| | |||||| |||| Sbjct 1329834 TCTGTGAAATTTCCCACACTGTTTTGTAAATAGCTTTTAAATCATCCGGAA 1329884 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 77120 AACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTC 77179 || || ||||||||||||||| || || || | ||||| ||||| | ||| | ||||| Sbjct 1331852 AATTACTTGAAATTCTCCAGATAAGACCCTTCTTGTGTACATATTTGTAGTAAACGGTTC 1331911 Query 77180 CACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAA 77239 | ||||||||||| || | || || || |||||||| || ||||| ||||| | | Sbjct 1331912 AAATGATTCATTGTTGCCAAGTATCTGCGCTGTAGAAGCTGTAGGCATTGGTGCTAGTAG 1331971 Query 77240 TAAACTATTTCTGAGACCATGT 77261 || |||||| ||||||||| Sbjct 1331972 CAAGGAATTTCTCAGACCATGT 1331993 Score = 89.7 bits (98), Expect = 7e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 77928 AATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAG 77987 || || || ||||||||||| | || || || | ||| ||| |||||||| ||||| Sbjct 1321520 AACTCCTCGCCCCAAACATCTGCTAAGCCTGGCGACACATGTGGACACATCAACGACCAT 1321461 Query 77988 TCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGA 78047 |||||| | || |||||||| |||||| |||||||| ||||||| ||| || ||| Sbjct 1321460 ACACCATTTGACTCAACTCGTTCCATAAAAAGATCAGGAATCCATAATGCATAGAAAAGA 1321401 Query 78048 TCTC 78051 |||| Sbjct 1321400 TCTC 1321397 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 77340 CCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCA 77399 || |||||||| ||| || | ||| | ||||||| ||| | | ||| || |||||| Sbjct 1332391 CCTTTACTAGCCGGTGAACCTTCATAAGAATCATAAGTTCCATGTATTTGTGCAAGTTCA 1332450 Query 77400 CAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGT 77459 || || ||||| || ||||| ||||| ||||||||||| |||| || || | ||||| Sbjct 1332451 CAGCTAGCTTCTAAAGCTCCATAATATATTGTTTCGAAGATCTGTTTGTTCAACTCTTGA 1332510 Query 77460 GC---TTCAATACTATCAAACGG-ATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTG 77515 || ||| ||| ||||| || || | | | ||||| ||| || | ||| || Sbjct 1332511 GCGCGTTC---ACTTTCAAATGGTATCCT-CATCTGGATAAAAAGATCAGCCAGTCCTTG 1332566 Query 77516 AACTCCAATACCAATAGGTCTATG 77539 || |||||||| || ||||| || Sbjct 1332567 TACACCAATACCGATCGGTCTGTG 1332590 Score = 86.0 bits (94), Expect = 9e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 78403 CTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATG 78462 ||||||| || | || || ||||||||||| || | ||| || | |||||||| | Sbjct 1318393 CTGCATTGAACATCGTAGGTGATGCATGCGTGAAGTAACCTTCCGACATCAGATTGTAAG 1318334 Query 78463 TTTCAATAGCTGATTCTATGTCCCATTGA--TGAATTCCTACCGCTACACGCATCAACAT 78520 | || || |||| || || || || | ||||| || || || || | ||||||||| Sbjct 1318333 TCTCTATGGCTGCGTCAATATC--ATCGCCGTGAATACCCACAGCAACCCTCATCAACAT 1318276 Query 78521 ATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 78580 ||||||||| | ||| || |||| || ||||| || || ||||| |||||| || Sbjct 1318275 ATGCTGAGGGCGTTCCACTACTTTATCATGGATTTTTAATAAATATGAACGTTCCAATGT 1318216 Query 78581 TTTAAAACCAAAA 78593 | |||| |||| Sbjct 1318215 CTAAAAAAAAAAA 1318203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694525203275680