Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq33 134 2e-26 seq126 109 8e-19 >seq33 Length=2490231 Score = 134 bits (148), Expect = 2e-26 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 46896 AACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTG 46955 || ||| |||||||| | | ||| ||||| || || |||| ||||| || || || || Sbjct 181688 AATATAAGTATCTATGAGTAAACTGTACATCTCAGAGTGAACATTTTCCATTGCAATTTG 181629 Query 46956 AAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAA 47015 || ||||||||||||||||||||||| | || || ||| || ||| | ||| || Sbjct 181628 GAAACCGTAAAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTAAACCTCTCAACTAA 181569 Query 47016 ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATA 47075 || ||||| || ||||||||| |||||||| || ||||||||||| |||||||| Sbjct 181568 GTTTTCATTAACAATTCCATCAGAGGCAGCAAAGAAAGCCAATACATGAGAAATAAAATG 181509 Query 47076 TTTTTCATC 47084 |||||| || Sbjct 181508 TTTTTCTTC 181500 Score = 127 bits (140), Expect = 3e-24 Identities = 167/225 (74%), Gaps = 5/225 (2%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 ||||||||||| ||| ||||| || || || ||||| ||||||| ||| | || | Sbjct 182650 CTTCATCTCTAGAAATCAATTCATTGCTGAAAGTAAGCCCTGGCATTAATCCTCTTTTCT 182591 Query 46712 TGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACAGCCGCGAAT 46770 | | ||||||||||||||| |||| | ||||| || |||| |||||| ||||| || || Sbjct 182590 TTAACCAAAATATAGCCGC-AAAGCTACCAGAGAAAAATACGCCTTCCACAGCAGCAAAA 182532 Query 46771 GCGACAAGTCTCTCTCCGTAACTGGCA-TCAT-TATGA-ATCCACCTTTGAGCCCAATCA 46827 || | || ||| ||| | || ||||| || | | || ||||| |||||| ||| Sbjct 182531 GCAATAATTCTTTCTGCAAAAGTGGCAGTCTTAGAGGAGATCCATTCCAAAGCCCAGTCA 182472 Query 46828 GCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 || |||||||| |||||| || || || || |||||||||||| Sbjct 182471 GCTTTTTTCTTCACACAATCCAGAGTCTCAATTGCATTAAAGAGA 182427 Score = 109 bits (120), Expect = 8e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTC 47175 ||||| | ||| ||||||||| | ||||| || ||||| ||||||||||| ||||| | | Sbjct 181293 TTTGAAAGATCAACTTCTTCAACCGTCCAAAAAGACGCTTCTGCTTTTTTGTACATTTGC 181234 Query 47176 CATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTATA 47235 ||||||||| | |||| || ||||| || |||||||| || || |||| ||||| | Sbjct 181233 CATATATCATGGTATTCAATTGGAAATATCACAAATCTTTTGGGGTTTTCACGAAGTAGA 181174 Query 47236 GGTTC 47240 ||||| Sbjct 181173 GGTTC 181169 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 || ||||| ||||| || ||||||||| |||||| | || ||||||||||| || | | Sbjct 182932 AGCCTATCAGCAACAAACTCTATATACTGTTTCATTAGCTCGCAATTCATTCCAATCATT 182873 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 | || || | || || || ||||| || | |||||| || ||||| ||||| Sbjct 182872 TCTACTGGCAAGGCTTCTGTGAGAAATTCCTTCTCAATAACCACTGCATCTTCAATTATT 182813 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638 || || | | | || | | ||| || | | |||||| ||||| | || |||||| Sbjct 182812 GAGGTGATTCTCTCTTTGGTCGGTTTTTGAACAAGATGTTTGAACATAAGGCAGGCAAAA 182753 Query 46639 TCACAATGAAGGCC 46652 |||||||| || || Sbjct 182752 TCACAATGTAGACC 182739 >seq126 Length=1333976 Score = 109 bits (120), Expect = 8e-19 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 76998 CTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATG 77057 ||||||| |||| ||||| |||||||| ||||| | ||| || | |||||||| | Sbjct 1318393 CTGCATTGAACATCGTAGGTGATGCATGCGTGAAGTAACCTTCCGACATCAGATTGTAAG 1318334 Query 77058 TTTCAATAACTGCTTCTATATCCCATTGA--TGAATTCCTACAGCGACACGCATCAACAT 77115 | || || |||| || ||||| || | ||||| || ||||| || | ||||||||| Sbjct 1318333 TCTCTATGGCTGCGTCAATATC--ATCGCCGTGAATACCCACAGCAACCCTCATCAACAT 1318276 Query 77116 ATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 77175 ||||||||| ||||| || |||| || ||||| || || ||||| |||||| || Sbjct 1318275 ATGCTGAGGGCGTTCCACTACTTTATCATGGATTTTTAATAAATATGAACGTTCCAATGT 1318216 Query 77176 TTTAAAACCAAAA 77188 | |||| |||| Sbjct 1318215 CTAAAAAAAAAAA 1318203 Score = 105 bits (116), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||||||||| |||| ||| |||| | || || || ||||| | || Sbjct 1329714 TCCACCCGTAGAAATGCATAGAAGTTAATTTTCCATAATTTGGTTCAGCAATATGTACAT 1329773 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | || || ||||||||| || ||||||||||| || |||||||||| || || | Sbjct 1329774 TTAAGGATTGTGATTGATCGATAAATGCTCCTCTATCTGCTGCCATTTTTAATATAGTTT 1329833 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | || | ||||||||| | |||||| ||| ||| | |||||| |||| Sbjct 1329834 TCTGTGAAATTTCCCACACTGTTTTGTAAATAGCTTTTAAATCATCCGGAA 1329884 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 ||||||||||||||| || || |||| ||||| ||||| | ||| | ||||| | || Sbjct 1331858 TTGAAATTCTCCAGATAAGACCCTTCTTGTGTACATATTTGTAGTAAACGGTTCAAATGA 1331917 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 ||||||||| || | || || || || ||||| || ||||| ||||| | | || Sbjct 1331918 TTCATTGTTGCCAAGTATCTGCGCTGTAGAAGCTGTAGGCATTGGTGCTAGTAGCAAGGA 1331977 Query 75841 ATTTCTGAGACCATGT 75856 |||||| ||||||||| Sbjct 1331978 ATTTCTCAGACCATGT 1331993 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 76523 AATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCAC 76582 || || || ||||||||||| | || || || | ||| ||||||||||| ||||| Sbjct 1321520 AACTCCTCGCCCCAAACATCTGCTAAGCCTGGCGACACATGTGGACACATCAACGACCAT 1321461 Query 76583 TCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGA 76642 |||||| | || ||| |||| |||||| |||||||| ||||||| ||| || ||| Sbjct 1321460 ACACCATTTGACTCAACTCGTTCCATAAAAAGATCAGGAATCCATAATGCATAGAAAAGA 1321401 Query 76643 TCTC 76646 |||| Sbjct 1321400 TCTC 1321397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712787027547840