Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_031077.1 Length=41760 Score E Sequences producing significant alignments: (Bits) Value seq6037 104 6e-18 seq2617 82.4 2e-11 >seq6037 Length=3259 Score = 104 bits (114), Expect = 6e-18 Identities = 172/251 (69%), Gaps = 12/251 (5%) Strand=Plus/Minus Query 41420 ATGGCTAAATCCCCAGCAGAACGCAAAGCCGCGCAGCGCGCGCGGCAGTCCGCCGCCGGT 41479 ||| ||||||||||||||||||| |||||||| ||||| | | || || Sbjct 2425 ATGCCTAAATCCCCAGCAGAACGTAAAGCCGCCCAGCGGGAG------------GCTGGC 2378 Query 41480 GAGCGCAAGCTTGAACTGGTGCTGGATGCTCAGGAACTGGACATGCTGGCGCGGAACTGC 41539 | ||| ||||||| || ||| |||||||||||||||||||| ||||||||| Sbjct 2377 GTAACAAAGTTTGAACTTAACCTCGATACTCAGGAACTGGACATGCTGCGCCGGAACTGC 2318 Query 41540 GCCGCCCGGCGCCCTGGGCGTGCGCCGTATGAAATGTCTGAGTACATCGCGATGCTGATT 41599 || | ||||| || || | ||| || || ||| ||||| ||| | ||||||| Sbjct 2317 GCTGTACGGCGACCAGGCAAAGAGCCCTACGACATGGACGAGTATATCCAGTTGCTGATC 2258 Query 41600 CGCCAGGATGATGCACGCGTTCGTGGGCGTATCAAATCTATCAGCGCTAACCGCTGCGGG 41659 ||| |||| || || | || || ||| || ||||| ||||| | || ||||| Sbjct 2257 CGCTAGGACGACGCCAGAGTGCGACAGCGGATTAAATCGCTCAGCAAGCAACGTTGCGGT 2198 Query 41660 AAGTGCGGTGA 41670 || || || || Sbjct 2197 AAATGTGGCGA 2187 >seq2617 Length=13952 Score = 82.4 bits (90), Expect = 2e-11 Identities = 175/251 (70%), Gaps = 19/251 (8%) Strand=Plus/Minus Query 21114 GTTGTCATAGTGATCA---CCTTTGTAGTTCCGGTTAATCACCACCGCTGAGAC-CAA-- 21167 ||||||||||| || | |||| ||||| || ||||||||| | | ||| Sbjct 1445 GTTGTCATAGTAATGATTTCCTTGTTAGTTAAGGAACATCACCACCTAGAGGTCTCAAAC 1386 Query 21168 TCAGAT-GGTGGTGAACTGTGCAGAGTTGGTCTTACCGGCTACAAAGGACCCGGCGCACC 21226 ||| || || ||||||||| || |||| ||||||||| |||||||||||| || Sbjct 1385 TCATATTGGCGGTGAACTGAATAGGGTTGAGACTACCGGCTAACAAGGACCCGGCGAGCC 1326 Query 21227 GTGAGGTGCCCCCACACAGCCCACCATAGAATATGGGTGCTAT----GCTTCACGCATaa 21282 || || |||||| ||||||||||| ||| || ||| | | |||||||| Sbjct 1325 TTGCGGCTCCCCCATCCAGCCCACCAT----TAT-TCTGATATGGCGGACTGACGCATAA 1271 Query 21283 aaaaaC-CGCT-CGCGCG-GTAATGCGCCTCTGTAGTAATCCGGGAGACCAATCCCGGCA 21339 |||||| |||| ||| || |||||||| |||| ||||||| ||| ||||||| Sbjct 1270 AAAAACACGCTGTAGGCGTGTTATGCGCCTTGTTAGTTATCCGGGGTCTCAAACCCGGCA 1211 Query 21340 CTGGATTTTGC 21350 | || ||||| Sbjct 1210 CCTGAATTTGC 1200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133484181644868