Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq57 167 6e-36 seq504 156 1e-32 >seq57 Length=2082711 Score = 167 bits (184), Expect = 6e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||||||| | |||||||||||||| ||| | || || ||| || || Sbjct 1619064 CAGATATTCGTGAAAACTTTAACAGGAAAAACGATTACCTTAGAAGTAGAACCTTCTGAT 1619005 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| |||||||| || || |||||||||||||| || |||||| Sbjct 1619004 ACAATTGAAAATGTAAAAGCTAAGATTCAAGATAAGGAAGGAATCCCTCCCGATCAGCAA 1618945 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || ||||| || |||||| | |||||||| | |||||| | ||||||||| | Sbjct 1618944 AGGTTGATTTTCGCTGGGAAACAGTTGGAAGATGGTCGAACTCTTTCTGATTATAACATT 1618885 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || ||||| |||||| |||||||||| | ||||| Sbjct 1618884 CAGAAAGAGTCAACATTGCATCTTGTCCTTAGACT 1618850 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||||| |||||||| || || || || || || ||| || ||| Sbjct 1619520 CAGATCTTTGTGAAGACTCTTACAGGAAAGACCATTACACTTGAAGTTGAACCATCTGAC 1619461 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || || ||||| || ||||||||||| || || ||||| ||| Sbjct 1619460 ACTATCGAAAATGTTAAGGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGACCAACAA 1619401 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | |||||||||||||| ||||| |||||||| | ||||| | |||||||| || Sbjct 1619400 AGGTTAATCTTCGCCGGAAAGCAGCTAGAAGATGGCCGCACTCTCTCAGATTATAATATC 1619341 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||||||||| || |||||||| | ||||| ||| Sbjct 1619340 CAGAAAGAATCAACTCTACATCTTGTACTCAGACTGAGA 1619302 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || |||||||| || || || || || || ||||| Sbjct 1620888 CAAATTTTTGTAAAAACCCTGACTGGAAAAACTATTACTCTTGAAGTTGAGCCGTCAGAT 1620829 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || || || ||||| ||||||||||| || || ||||| ||| Sbjct 1620828 ACAATAGAGAACGTAAAGGCTAAAATCCAGGATAAAGAAGGAATTCCACCCGACCAACAA 1620769 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| ||| | |||||||| | |||||| | |||||||| | Sbjct 1620768 AGATTAATCTTCGCCGGAAAGCAGTTAGAAGATGGCCGCACTCTTTCAGATTATAATATT 1620709 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || |||||||| || || |||||||| | ||||| ||| Sbjct 1620708 CAGAAAGAATCTACTCTACATCTTGTACTCAGACTGAGA 1620670 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || |||||||||||||| || || || || ||| || ||| Sbjct 1621116 CAGATCTTCGTCAAGACCCTTACAGGAAAAACGATTACACTTGAAGTTGAACCTTCTGAC 1621057 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || || ||||| || ||||||||||| || || ||||| ||| Sbjct 1621056 ACAATCGAAAATGTTAAGGCTAAAATTCAAGATAAAGAAGGAATTCCGCCAGACCAACAA 1620997 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| ||| | |||||||| | |||||| | |||||||| | Sbjct 1620996 AGATTAATCTTCGCCGGAAAGCAGTTAGAAGATGGCCGCACTCTTTCAGATTATAATATT 1620937 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || |||||||| || || |||||||| | ||||| ||| Sbjct 1620936 CAGAAAGAATCTACTCTACATCTTGTACTCAGACTAAGA 1620898 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| |||||||| || || || || || || ||| || ||| Sbjct 1620204 CAGATCTTCGTTAAGACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTCTGAC 1620145 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| |||||||| || || |||||||| || || ||||||||| Sbjct 1620144 ACAATTGAAAATGTAAAAGCGAAGATTCAAGATAAGGAAGGAATACCACCTGACCAGCAA 1620085 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || ||||| || |||||| | |||||||| | || ||| | ||||| || | Sbjct 1620084 AGGTTGATTTTCGCTGGGAAACAGTTAGAAGATGGGCGCACCCTTTCTGATTACAATATT 1620025 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||||||||| || |||||||| || ||||| ||| Sbjct 1620024 CAGAAAGAATCAACTCTTCATCTTGTCTTAAGACTGAGA 1619986 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||||||||| || |||||||| || || || || || || ||| || Sbjct 1619292 CAAATTTTCGTGAAAACTCTGACTGGAAAAACAATTACTCTTGAAGTTGAGCCCTCTGAT 1619233 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || ||||| || ||||||||||| || || ||||| Sbjct 1619232 ACTATTGAAAATGTTAAAGCCAAAATCCAGGATAAGGAAGGAATCCCACCAGATCAGCAG 1619173 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || ||||| ||| | |||||||| | ||||| | ||||| || | Sbjct 1619172 CGTCTTATTTTTGCTGGAAAGCAGTTGGAAGATGGCCGAACTCTATCTGATTACAATATT 1619113 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || || || || ||| | ||| Sbjct 1619112 CAAAAGGAGTCCACCCTTCATTTAGTT 1619086 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||||||||| || |||||||| || || || || || || || || Sbjct 1619748 CAAATTTTTGTGAAAACTCTGACTGGAAAAACTATTACTCTTGAAGTTGAGCCGTCTGAT 1619689 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || || || ||||| ||||||||||| || || || ||||| Sbjct 1619688 ACAATAGAGAACGTAAAGGCTAAAATCCAGGATAAAGAAGGAATTCCACCAGATCAGCAG 1619629 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || ||||| ||| | |||||||| | ||||| | ||||| || | Sbjct 1619628 CGTCTTATTTTTGCTGGAAAGCAGTTAGAAGATGGCCGAACTCTATCTGATTACAATATT 1619569 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || || || || ||| | ||| | | |||||| Sbjct 1619568 CAAAAGGAGTCCACCCTTCATTTGGTTCTTCGGCTCAGA 1619530 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||||||||| || |||||||| || || || || ||||| ||| || Sbjct 1620660 CAAATTTTTGTGAAAACTCTGACTGGAAAAACAATTACTCTTGAAGTGGAGCCCTCTGAT 1620601 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || ||||| || ||||||||||| || || ||||| Sbjct 1620600 ACTATTGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATCCCACCAGATCAGCAG 1620541 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || ||||| ||| | |||||||| | ||||| | ||||| || | Sbjct 1620540 CGTCTTATTTTTGCTGGAAAGCAGTTGGAAGATGGCCGAACTCTATCTGATTACAATATT 1620481 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || || || || ||| | ||| Sbjct 1620480 CAAAAGGAGTCCACCCTTCATTTAGTT 1620454 Score = 113 bits (124), Expect = 1e-19 Identities = 162/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| ||||| | || || || || || || || || || || Sbjct 1621350 AAAATGC---AGATCTTCGTAAAAACGTTGACGGGGAAGACAATAACTCTTGAAGTTGAG 1621294 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||| || || || ||||| || || ||||| || || |||||||||||||| Sbjct 1621293 CCTTCAGATACTATTGAAAACGTAAAGGCTAAAATTCAAGATAAGGAAGGAATCCCTCCT 1621234 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||||||| | || || || ||||| ||| | |||||||| | || || ||||| Sbjct 1621233 GATCAGCAACGATTAATTTTTGCTGGAAAGCAGTTGGAAGATGGTCGTACCCTATCCGAT 1621174 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || | || || || || || ||||| | ||| | |||||||| Sbjct 1621173 TACAATATACAGAAGGAGTCCACGTTGCATTTGGTTCTTCGACTCAGA 1621126 >seq504 Length=327254 Score = 156 bits (172), Expect = 1e-32 Identities = 154/198 (78%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972 ||||||| | |||||||| ||||||||| | || || ||||| || ||||| ||||| | Sbjct 214300 TTAAAATA-TGCAAATTTTTGTGAAAACTTTGACGGGTAAAACAATTACCCTTGAGGTTG 214242 Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||||||||| || || || || || |||||| || || ||||||||||| |||| Sbjct 214241 AACCCTCAGACACAATTGAAAATGTTAAGGCAAAGATCCAAGATAAAGAAGGAATTCCTC 214182 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | || |||||| || | || || || || |||||||| ||||||||| | || ||| ||| Sbjct 214181 CAGATCAGCAAAGATTGATTTTTGCTGGCAAACAGCTAGAAGATGGACGCACCCTTTCCG 214122 Query 178093 ATTATAACGTCCAAAAAG 178110 |||| || |||| |||| Sbjct 214121 ATTACAATATCCAGAAAG 214104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203476153057178