Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq231676 91.5 3e-13 seq25645 91.5 3e-13 seq287342 89.7 1e-12 seq201798 89.7 1e-12 seq114872 89.7 1e-12 seq72982 89.7 1e-12 >seq231676 Length=1030 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 602 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 661 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 662 CCCCACGTTGGGC 674 >seq25645 Length=1916 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 599 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 540 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 539 CCCCACGTTGGGC 527 >seq287342 Length=4947 Score = 89.7 bits (98), Expect = 1e-12 Identities = 331/508 (65%), Gaps = 22/508 (4%) Strand=Plus/Minus Query 281526 ATCAAACGCTTCACGTTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGAC 281585 |||| |||| | | ||| ||| || ||| | || |||| | | ||| || |||||| Sbjct 3001 ATCATACGCCTAATGTTTGCTAAAATATCTCTAGGGTTATGATTATAAATCTTTGTAGAC 2942 Query 281586 CAACCGGTTCCAATACCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAA 281645 ||||| || ||||||||| | ||| |||||||| | | || || || |||| ||| Sbjct 2941 CAACCAGTACCAATACCATCCGCACCGTTTACCAATACCATGGGAATTATTGGTATATAC 2882 Query 281646 CATTCTGGTTCAATTTTATCACCATCATC--ATACA-AATACTTCAGAAGGTTATCATCT 281702 |||| ||||| ||||| | ||||||||| | || || || || ||| |||| || Sbjct 2881 CATTGAGGTTCTATTTTTTGACCATCATCTACTTCATAAGACAATAGTGGGTCATCAGCT 2822 Query 281703 GTATCGACGAAAACCTGTCGCGTCTTAGGGT----TCAGTTTCGTGAAGATATACCTTGC 281758 | || || |||| | || | || | ||| ||| | ||||| ||||| | || Sbjct 2821 GGAT-GA--AAAATCAAACGAG-CTAATGGTGACATCAAT---GTGAAAATATAACGAGC 2769 Query 281759 ACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCA 281818 || || |||||||||||| | | | || || ||||| ||| | | Sbjct 2768 GCTAGCACTGTCTTTACCACCTGTTAAACGGGTACCGAATTGACCTCTAGGCTCGAGTAA 2709 Query 281819 GTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGA 281878 ||||| ||||| || ||||||| ||| |||| || || || ||| || | || Sbjct 2708 ATTAATATTATTTGAACCAACGTAATTCTGGGCCAAATTAACAATAGTCATTTGTAAAGA 2649 Query 281879 TACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAA--CTGTGCTACC 281936 || ||||| || || || | ||| || ||| ||| ||||| || || ||| Sbjct 2648 AACTTCACCATGATGGTATGAAGACATTTCCGCCACAGAAC--CTGAAAGTTGCGCCACC 2591 Query 281937 TTCAC--GTCTGATGTCAAGTTGCGTTTGAAAGCGCAATATAATACTTTTCGTTGAGAAG 281994 || || ||| ||||| || ||||||||| | | | | || || |||||| | Sbjct 2590 TTTACTTCTCTCTTGTCA--TTACGTTTGAAACAGGTAAACATAACCTTACGTTGACCGG 2533 Query 281995 GCTTGAAACCATCAACGACAGACGGAAT 282022 | || |||||||| || | | |||| || Sbjct 2532 GTTTAAAACCATCTACCAAACACGGTAT 2505 >seq201798 Length=1561 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 447 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 388 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 387 CCCACGTTGGGC 376 >seq114872 Length=2020 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 1494 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1435 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1434 CCCACGTTGGGC 1423 >seq72982 Length=1265 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 1065 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1006 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1005 CCCACGTTGGGC 994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1053928422627750