Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq285928 114 1e-20 >seq285928 Length=2047 Score = 114 bits (126), Expect = 1e-20 Identities = 242/350 (69%), Gaps = 12/350 (3%) Strand=Plus/Minus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGA-TACA 119919 ||||| || || || ||||| | |||||||| || ||||| || ||||| | | Sbjct 965 CCCACATAACCATTTGGATCTCTACCATCTAAACTATACTTATCATT-AAGTAAAATGGC 907 Query 119920 GACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACAT 119979 || || || ||| |||| || ||||||||| ||| ||||||||||| ||||| Sbjct 906 GAATTCCAAAGCCTGTTCTGGAGATTCTGTCCATTCCAATATCTTTTTAGCCCAATACAT 847 Query 119980 ACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAA 120039 |||||| | || |||||||| ||||| ||||| ||||| |||||| | ||||||| Sbjct 846 ACGTAAAAAACCGTGCATTTTTCCTTCTTTAACCAGTTGAATTTGTGCTGAATTCCATAG 787 Query 120040 GGGATCGTGTGTACGGGCGTGTTCTAAACTATACGTATCGTATAGATAGG-GT-CGAGTA 120097 ||| || ||||| | | ||| ||| | ||||| |||||| ||| || || || Sbjct 786 ATCATCATGAGTACGAGAGCTTTC-AAATTCGTCGTAT-GTATAGCAAGGAGTACGTTTA 729 Query 120098 TCCCGTCGATGTTCGTCTAACGTACGTAAAGCCCACGGAT-GCGTCGACGTAATAGA--A 120154 || || || || | ||| || |||||| || | | ||| |||| Sbjct 728 TCTTTACGGTGATCATTTAATGTTTTGGCAGCCCA---ATCGTGAAGACCCTTTAGATTG 672 Query 120155 TCGTATCGTTTATTATAATAACAAAAGTTATCGGATAATTCCCGTCGTAC 120204 ||||| |||||||||||||||||||||||||| ||||| | ||| || Sbjct 671 TCGTAATTTTTATTATAATAACAAAAGTTATCGGCCAATTCTCTTCGCAC 622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515686155699000