Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq285928 132 5e-26 >seq285928 Length=2047 Score = 132 bits (146), Expect = 5e-26 Identities = 247/352 (70%), Gaps = 12/352 (3%) Strand=Plus/Minus Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTATCGTTTAAGTAGA-TACA 119072 ||||| || || || |||||| | || ||||| |||||||| || ||||| | | Sbjct 965 CCCACATAACCATTTGGATCTCTACCATCTAAACTATACTTATCATT-AAGTAAAATGGC 907 Query 119073 GACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACAT 119132 || || || ||| |||| | ||||||||| ||| ||||||||||| ||||| Sbjct 906 GAATTCCAAAGCCTGTTCTGGAGATTCTGTCCATTCCAATATCTTTTTAGCCCAATACAT 847 Query 119133 ACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATAG 119192 ||||||| | ||||||||||| || || |||| || |||| |||||| | |||||||| Sbjct 846 ACGTAAAAAACCGTGCATTTTTCCTTCTTTAACCAGTTGAATTTGTGCTGAATTCCATAG 787 Query 119193 AGGATCGTGTGTACGGGCGTGTTCTAAACTAGACGTATCGTATAGATAGG-GT-CGTAAA 119250 | ||| || ||||| | | ||| ||| | | ||||| |||||| ||| || ||| | Sbjct 786 ATCATCATGAGTACGAGAGCTTTC-AAATTCGTCGTAT-GTATAGCAAGGAGTACGTTTA 729 Query 119251 TCCTGTCGATGATCGTCTAACGTACGTAAAGCCCATGGAT-GCGTTGAGGTAATAGA--A 119307 || | || ||||| | ||| || |||||| || | | || |||| Sbjct 728 TCTTTACGGTGATCATTTAATGTTTTGGCAGCCCA---ATCGTGAAGACCCTTTAGATTG 672 Query 119308 TCGTATAGTTTATTGTAATAACAAAAGTTGTCGGATAATTCCCGTCGTACAA 119359 ||||| |||||| |||||||||||||| |||| ||||| | ||| |||| Sbjct 671 TCGTAATTTTTATTATAATAACAAAAGTTATCGGCCAATTCTCTTCGCACAA 620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509576983951000