Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq282627 381 7e-101 >seq282627 Length=1296 Score = 381 bits (422), Expect = 7e-101 Identities = 769/1126 (68%), Gaps = 20/1126 (2%) Strand=Plus/Minus Query 53941 ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 54000 ||| ||| |||||||| || ||||| |||| | || |||||||||| | ||||| Sbjct 1281 ATATAATTCTTCAAACTTTTCGCCCCATACATCATGCAGACCAGGACATTTGTGGGGACA 1222 Query 54001 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 54060 ||| || ||||| || || | |||| |||| ||||||||| ||||| || ||||| || Sbjct 1221 CATTAAAGACCAATCACCATTTTCCTCAACTCTTTTCATAAATAGATCTGGTATCCATAG 1162 Query 54061 AGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT-TTTAAGATCG 54118 ||| || ||| |||||||| | | || ||| || || || ||||| || |||||| || Sbjct 1161 AGCGTAGAAA-AGATCTCTAGCGCGATTTTCTTCCTTGCCAGTATTTTTCTTTAAG-TCT 1104 Query 54119 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGT 54178 | || | | |||||| |||||||| || ||||| || | || | | | ||||| ||| Sbjct 1103 AAAAATTCAAAAATATCCGAATGCCAAGGCTCCAAATAGACGGCAAAAGCACCAGGACGT 1044 Query 54179 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 54238 || || ||||| || | ||||| || ||||| | ||||||||||| || | Sbjct 1043 TTACCACCACCCTGGTCGACATATCTGGCCACATTATTGAACACTCTCAACATGGGCACC 984 Query 54239 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 54298 | |||||| || | ||||| || || ||| | | || |||| || ||| | | Sbjct 983 AAACCATTCGAAGTGCCATTAGTGCCATCAATAGAAGTGCCTTTGGCGCGTATACAATGA 924 Query 54299 A--TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 54356 | ||||| || || || || || ||| || || | || ||| ||| | | | Sbjct 923 ACATTGATG--CCAATACCGCCGGCTGATTTGGAAATCATAGCACATTGTTCGACAGATT 866 Query 54357 CATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGG 54415 | || ||||||||| |||| | | ||| |||||| |||| || | || | |||| Sbjct 865 TGAAAATACCCTCTATAGAATCAGCTACCATAGTTAAGAGGAAACAAGAT-GATAGTTGG 807 Query 54416 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 54475 | | | || |||| ||| || || || ||||| || ||||| || |||| || Sbjct 806 GGTCTGTTGGTGGCCGCGGCAAACAAAGTTGGCGAAGCATGTGTAAAATATCTTTCCGAT 747 Query 54476 AGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACA 54535 | || ||| || ||||| || ||||| ||||||||| ||| || || | | || Sbjct 746 AATAAATTATATGTCTCTATGGCTGAATCTATATCCTCACCATGTATACCAATCGACACG 687 Query 54536 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGAT 54595 ||||||||||| ||||| |||||||| || |||||| | ||||||||||| || ||| Sbjct 686 CGCATTAACATATGCTGTGGTCTTTCCACAATCTTGCCATGCATTTTCAGCAAATACGAT 627 Query 54596 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACT 54655 |||||||||||||||| |||||||| ||||| ||| || || || |||||||| | Sbjct 626 CTTTCCAAAGTTTTAAACCCAAAATAATTGTAACCAAAATCACGATCATAAATAATGGCA 567 Query 54656 GAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAAT--ACTT--GAAATAAT 54711 || || | | | || || ||| | || | ||| ||||| | || || || || Sbjct 566 GAATTTAATCTCTCGGCATTTTTTTGCACAA----CATTGTAATGAAATTCAGATATCAT 511 Query 54712 CGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACT 54771 || || | ||| ||| ||| ||| | ||| ||||| | || || || Sbjct 510 AGGCGATGCCCTGCCAGTTTCTTTATTCACAAATTTATGCAAATCACTTATAACCTCCGA 451 Query 54772 AAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGC 54831 ||||| |||||| ||||| || || | ||| ||||||||||| | |||||| | || || Sbjct 450 AAATACTTTTTTAGTTTCCTTATGCAAATTGGATACGGCTATACGAGCGGCCAATATAGC 391 Query 54832 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTC 54891 ||||| ||| | || || | |||||||| ||||||| | || | | || | ||| Sbjct 390 GTAATCACCATGATTGGTGGTTAAGGTGGCTGCAGTTTCGGCCGCCAAATTATCGAGTTC 331 Query 54892 TACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATC 54951 || ||||||||| ||| | ||| | ||| || || | | ||| | |||||| Sbjct 330 CTGTGTAGTTACTCCACAATACAATCCATTGATTACTTTAAGCGTTATGGCCACAGGATC 271 Query 54952 TATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAA 55011 | | ||| | || | ||||| || | |||| || || || |||||||||||||| Sbjct 270 GACAAAATCCATATTCAGCCCATAGCAAAGTTTTTGTATGCGCGAAGTGATTTTATCAAA 211 Query 55012 CATG-ACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 55056 ||| || | ||| ||| ||||| |||||| | ||||| | ||| Sbjct 210 -ATGTACCTCTTCTTTGCGTCCATCTCGTTTGAGTACAAAGAGTTT 166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591588469614000