Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq285928 208 1e-48 >seq285928 Length=2047 Score = 208 bits (230), Expect = 1e-48 Identities = 321/461 (70%), Gaps = 4/461 (1%) Strand=Plus/Minus Query 202868 CCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNN 202927 || ||||| ||||||||||| | ||||||| | ||| |||||||| | Sbjct 965 CCCACATAACCATTTGGATCTCTACCATCTAAACTATACTTATCATTAAGTAAAATGGCG 906 Query 202928 NNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATT 202987 || || | |||||| |||| ||||||||| ||||| ||||||||||||||||| Sbjct 905 AATTCCAAAGCCTGTTCTGGAGATTCTGTCCATTCCAATATCTTTTTAGCCCAATACATA 846 Query 202988 CTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAA 203047 | |||| | || |||||||| || | ||| || ||| |||||| || |||||||| | Sbjct 845 CGTAAAAAACCGTGCATTTTTCCTTCTTTAACCAGTTGAATTTGTGCTGAATTCCATAGA 786 Query 203048 TTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCA 203107 | |||||||| | |||||| || | | |||| | | | | |||| Sbjct 785 TCATCATGAGTACGAGAGCTTTCAAATTCGTCGTATGTATAGCAAGGAGTACGTTTATCT 726 Query 203108 TTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAA 203167 || || ||||||| |||||| ||||||| | | ||| |||| ||| |||||| Sbjct 725 TTACGGTGATCATTTAATGTTTTGGCAGCCCAATCGTGAAGACCCTTTAGATTGTCGTAA 666 Query 203168 TTTTCATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTCACAA 203227 |||| ||||||||||||||| ||||| | |||| | || | ||| |||||||||||| Sbjct 665 TTTTTATTATAATAACAAAAGTTATCGGCCAATTCTCTTCGCACAATTGCTTCTTCACAA 606 Query 203228 AAAACTTCTACCGATTTAGGATATAATTT--TTTATATTTGTTAATTTCTAATATTATTC 203285 || | |||||||||| || | ||| |||||||| |||| || || | | Sbjct 605 AACGCCTCTACCGATT--CTTTAGACTTTGATTTATATTGTTTAACCTCCAAGACACAAC 548 Query 203286 TTTGAGTTGAAATTTGACCAAAATGTATCCATGGTGATAAA 203326 |||| ||||||||||||||||| | ||| ||||| ||| Sbjct 547 GTTGAACAGAAATTTGACCAAAATGAAACCAGGGTGACAAA 507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752741788240000