Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq285928 143 5e-29 >seq285928 Length=2047 Score = 143 bits (158), Expect = 5e-29 Identities = 278/401 (69%), Gaps = 16/401 (4%) Strand=Plus/Plus Query 189170 TTATCTCCGTGGCTACATTTTGGTCATGTATCCGCACAACGTGTTGCCTTAGAAGTATTA 189229 || || || ||| | ||||||||||| | || | |||||| || ||| || || || Sbjct 508 TTGTCACCCTGGTTTCATTTTGGTCAAATTTCTGTTCAACGTTGTGTCTTGGAGGT--TA 565 Query 189230 AAATGTATACGAGAAAG-CaaaaaaaaCGTT-GAAACGTTTATAGATGAAATAATTGTAA 189287 || |||| |||| | ||| || || | || ||||| || ||| |||||| Sbjct 566 AACAATATAAATCAAAGTCTAAAGAATCGGTAGAGGCGTTTTGTGAAGAAGCAATTGTGC 625 Query 189288 GAAGAGAACTATCGGATAATTTTTGTTACTATAACAAACATTATGATAGTATCCAGTCTA 189347 |||||||| | | ||||| |||||||| ||||| ||| |||| || | | | || | Sbjct 626 GAAGAGAATTGGCCGATAACTTTTGTTATTATAATAAAAATTACGACAATCTAAAGGGTC 685 Query 189348 CTCATTCATGGGCCAGAAAAACATTAGAAGATCACATTAATGATCCTAGAAAGTA----T 189403 ||| ||||| ||||||||| | |||||| ||| ||| || ||| | Sbjct 686 TTCACGATTGGGCTGCCAAAACATTAAATGATCACCGTAAAGATA----AACGTACTCCT 741 Query 189404 ATATATTCCATTAAAC-AACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAACGCGTC 189462 ||| | || || || | |||| | ||||||||| ||||||||| | | Sbjct 742 TGCTATAC-ATACGACGAATTTGAAAGCTCTCGTACTCATGATGATCTATGGAATTCAGC 800 Query 189463 ACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAA 189522 |||||| || |||| | ||||||||||||||| |||||||||| |||||||||||||| Sbjct 801 ACAAATTCAACTGGTTAAAGAAGGAAAAATGCACGGTTTTTTACGTATGTATTGGGCTAA 860 Query 189523 GAAGATACTTGAATGGACTAGAA-CACCTGAAGACGCTTTG 189562 |||||| | |||||||| |||| | || ||| | |||||| Sbjct 861 AAAGATATTGGAATGGAC-AGAATCTCCAGAACAGGCTTTG 900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919879926997000