Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq282627 228 7e-55 >seq282627 Length=1296 Score = 228 bits (252), Expect = 7e-55 Identities = 564/852 (66%), Gaps = 8/852 (1%) Strand=Plus/Minus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 ||||| | | ||||||| ||||| |||||||||||||||||||| || || | ||||| Sbjct 1196 TCAACTCTTTTCATAAATAGATCTGGTATCCATAGAGCGTAGAAAAGATCTCTAGCGCGA 1137 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 || || ||||| || || || || || || ||||| || || | |||| |||||| Sbjct 1136 TTTTCTTCCTTGCCAGTATTTTTCTTTAAGTCTAAAAATTCAAAAATATCCGAATGCCAA 1077 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGG 23521 ||||| | || |||||||| || || || | ||| || ||||| ||||| || | | Sbjct 1076 GGCTCCAAATAGACGGCAAAAGCACCAGGACGTTTACCACCACCCTGGTCGACATATCTG 1017 Query 23522 GCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCC 23581 ||| || ||| ||||||| | ||| ||||| | ||| || || | ||| || Sbjct 1016 GCCACATTATTGAACACTCTCAACATGGGCACCAAACCATTCGAAGTGCCAT-TAGT--- 961 Query 23582 GCCA-CACTCGAA---CCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCC 23637 |||| || | ||| ||||| || || | ||||| | || || || || ||| | Sbjct 960 GCCATCAATAGAAGTGCCTTTGGCGCGTATACAATGAACATTGATGCCAATACCGCCGGC 901 Query 23638 CGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTC 23697 ||||| || ||||| || ||||||| | || | | | || ||||| || || | Sbjct 900 TGATTTGGAAATCATAGCACATTGTTCGACAGATTTGAAAATACCCTCTATAGAATCAGC 841 Query 23698 TTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAG 23757 | | | | | |||||| || || | ||| | | || || || || | |||| Sbjct 840 TACCATAGTTAAGAGGAAACAAGATGATAGTTGGGGTCTGTTGGTGGCCGCGGCAAACAA 781 Query 23758 TGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGC 23817 || || || || ||||| |||| | ||| | || ||| || || || ||||| | Sbjct 780 AGTTGGCGAAGCATGTGTAAAATATCTTTCCGATAATAAATTATATGTCTCTATGGCTGA 721 Query 23818 ATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC 23877 ||| || ||||| || |||||||| || | |||||||| | ||| | || ||||| || Sbjct 720 ATCTATATCCTCACCATGTATACCAATCGACACGCGCATTAACATATGCTGTGGTCTTTC 661 Query 23878 GACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937 || | ||| | ||||| | || ||| || | || || |||||||| |||||||| Sbjct 660 CACAATCTTGCCATGCATTTTCAGCAAATACGATCTTTCCAAAGTTTTAAACCCAAAATA 601 Query 23938 GTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGC 23997 | || ||| |||||||| | | ||||| ||||| || | | ||||| Sbjct 600 ATTGTAACCAAAATCACGATCATAAATAATGGCAGAATTTAATCTCTCGGCATTTTTTTG 541 Query 23998 GATGATGTTGTAATGAAAATTCGATATCATCGGCGTTTTAACGCCGGTCTTTGGATCGAT 24057 | | ||||||||||| | |||||||| |||| | ||| || | | || | Sbjct 540 CACAACATTGTAATGAAATTCAGATATCATAGGCGATGCCCTGCCAGTTTCTTTATTCAC 481 Query 24058 CGCTTCATACATATCGATAATGACATCGAAAAAAGAATCTTTAGTCTCCTTGTGCAAATT 24117 || || || ||| | || || || |||| | |||||| ||||| |||||||| Sbjct 480 AAATTTATGCAAATCACTTATAACCTCCGAAAATACTTTTTTAGTTTCCTTATGCAAATT 421 Query 24118 AGACACGGCCAATCTAGCCGCAAGCAACGAATAGTCGGAATGATCGATGGTCATGGCCGC 24177 || ||||| | | ||| || | | | || || ||||| | |||| | || || Sbjct 420 GGATACGGCTATACGAGCGGCCAATATAGCGTAATCACCATGATTGGTGGTTAAGGTGGC 361 Query 24178 TGCCGTCTCGGC 24189 ||| || ||||| Sbjct 360 TGCAGTTTCGGC 349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444164844906000