Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq282627 349 4e-91 seq22934 95.1 2e-14 >seq282627 Length=1296 Score = 349 bits (386), Expect = 4e-91 Identities = 762/1126 (68%), Gaps = 20/1126 (2%) Strand=Plus/Minus Query 63179 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACA 63238 ||| ||| ||| |||| || ||||| |||| | || | |||||||| | ||||| Sbjct 1281 ATATAATTCTTCAAACTTTTCGCCCCATACATCATGCAGACCAGGACATTTGTGGGGACA 1222 Query 63239 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63298 ||| || ||||| || || | |||| |||| ||||||||| ||||| || ||||| || Sbjct 1221 CATTAAAGACCAATCACCATTTTCCTCAACTCTTTTCATAAATAGATCTGGTATCCATAG 1162 Query 63299 AGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTT-TTTAAGATCG 63356 ||| || ||| |||||||| | | || ||| || || || ||||| || |||||| || Sbjct 1161 AGCGTAGAAA-AGATCTCTAGCGCGATTTTCTTCCTTGCCAGTATTTTTCTTTAAG-TCT 1104 Query 63357 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGT 63416 | || | | |||||| |||||||| || ||||| || | ||| | | | ||||| ||| Sbjct 1103 AAAAATTCAAAAATATCCGAATGCCAAGGCTCCAAATAGACGGCAAAAGCACCAGGACGT 1044 Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 || || ||||| || | ||||| || ||||| | ||||||||||| || | Sbjct 1043 TTACCACCACCCTGGTCGACATATCTGGCCACATTATTGAACACTCTCAACATGGGCACC 984 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTA 63536 | ||| || || | ||||| || || ||| | || |||| || ||| | | Sbjct 983 AAACCATTCGAAGTGCCATTAGTGCCATCAATAGAAGTGCCTTTGGCGCGTATACAATGA 924 Query 63537 A--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGT 63594 | ||||| || || || || || ||| || || | || ||| ||| | | | Sbjct 923 ACATTGATG--CCAATACCGCCGGCTGATTTGGAAATCATAGCACATTGTTCGACAGATT 866 Query 63595 CATAGATGCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGG 63653 | || || ||||| |||| | | ||| |||||| |||| || | || | |||| Sbjct 865 TGAAAATACCCTCTATAGAATCAGCTACCATAGTTAAGAGGAAACAAGAT-GATAGTTGG 807 Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 63713 | | | || |||| ||| || || || ||||| || ||||| || |||| || Sbjct 806 GGTCTGTTGGTGGCCGCGGCAAACAAAGTTGGCGAAGCATGTGTAAAATATCTTTCCGAT 747 Query 63714 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACA 63773 | || ||| || ||||| || ||||| ||||||||| ||| || || | | || Sbjct 746 AATAAATTATATGTCTCTATGGCTGAATCTATATCCTCACCATGTATACCAATCGACACG 687 Query 63774 CGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGAT 63833 ||||||||||| ||||| |||||||| ||||| ||| | ||||||| ||| || ||| Sbjct 686 CGCATTAACATATGCTGTGGTCTTTCCACAATCTTGCCATGCATTTTCAGCAAATACGAT 627 Query 63834 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 63893 |||||||||||||||| |||||||| ||||| ||| || || || |||||||| | Sbjct 626 CTTTCCAAAGTTTTAAACCCAAAATAATTGTAACCAAAATCACGATCATAAATAATGGCA 567 Query 63894 GAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAAT--ACTT--GAAATAAT 63949 ||||| | | || || ||| | || | ||| ||||| | || || || || Sbjct 566 GAATTTAATCTCTCGGCATTTTTTTGCACAA----CATTGTAATGAAATTCAGATATCAT 511 Query 63950 CGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACT 64009 || || | ||| ||| ||| ||| | || ||||| || || || Sbjct 510 AGGCGATGCCCTGCCAGTTTCTTTATTCACAAATTTATGCAAATCACTTATAACCTCCGA 451 Query 64010 AAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGC 64069 ||||| |||||| |||||||| || | ||| |||| |||||| | ||||| | || || Sbjct 450 AAATACTTTTTTAGTTTCCTTATGCAAATTGGATACGGCTATACGAGCGGCCAATATAGC 391 Query 64070 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 64129 ||||| ||| | || || | |||||||| ||||||| |||| | | || | ||| Sbjct 390 GTAATCACCATGATTGGTGGTTAAGGTGGCTGCAGTTTCGGCCGCCAAATTATCGAGTTC 331 Query 64130 TACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATC 64189 || ||||||||| ||| | ||| | || || || | | ||| | |||||| Sbjct 330 CTGTGTAGTTACTCCACAATACAATCCATTGATTACTTTAAGCGTTATGGCCACAGGATC 271 Query 64190 TATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATACGAGACGTGATTTTATCAAA 64249 | | |||| | || | |||||||| | |||| || || || |||||||||||||| Sbjct 270 GACAAAATCCATATTCAGCCCATAGCAAAGTTTTTGTATGCGCGAAGTGATTTTATCAAA 211 Query 64250 CATG-ACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 64294 ||| || | ||| ||| ||||| |||||| | ||||| | ||| Sbjct 210 -ATGTACCTCTTCTTTGCGTCCATCTCGTTTGAGTACAAAGAGTTT 166 >seq22934 Length=10236 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 28697 ATACCCAATTCCTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAA 28756 || |||||||| ||||| || |||| |||||||||||||| || || || || | || Sbjct 4595 ATTCCCAATTCTTTGACTTGTGTTAAGGATCTCCAATCCATATTGGCACTACCGAGGTAT 4536 Query 28757 ATATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 28803 | |||| ||||||| || ||||||||||| ||||| | |||||||| Sbjct 4535 ACATGTTTATTATCGGAAATCCAAAATTTGGTATGCAAGACTCCTCC 4489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627554783454000