Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq282627 194 2e-44 >seq282627 Length=1296 Score = 194 bits (214), Expect = 2e-44 Identities = 475/710 (67%), Gaps = 10/710 (1%) Strand=Plus/Minus Query 37929 ATATAATTTGTTAAAATCATTCCCCCATACATC--GCATAATCCTGGACATTCGCATGGA 37986 |||||||| | ||| | | ||||||||||| ||| | || ||||||| | ||| Sbjct 1281 ATATAATTCTTCAAACTTTTCGCCCCATACATCATGCAGA--CCAGGACATTTGTGGGGA 1224 Query 37987 CACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCAT 38046 ||||||| |||||| || ||| || || || | || |||||||| ||| |||| |||| Sbjct 1223 CACATTAAAGACCAATCACCATTTTCCTCAACTCTTTTCATAAATAGATCTGGTATCCAT 1164 Query 38047 AATGCAGTA-AATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCT 38105 | || ||| || | |||| | | | || |||||| || || ||| || ||||| Sbjct 1163 AGAGC-GTAGAAAAGATCTCTAGCGCGATTTTCTTCCTTGCCAGTATTTTTCTTTAAGTC 1105 Query 38106 TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCT 38165 || ||| || || ||||| | ||||| || || | ||| | | | || || || | Sbjct 1104 TAAAAATTCAAAAATATCCGAATGCCAAGGCTCCAAATAGACGGCAAAAGCACCAGGACG 1045 Query 38166 TTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTAC 38225 |||| |||| ||||| | | |||||| | ||||| | | ||| ||||| || || Sbjct 1044 TTTACCACCACCCTGGTCGACATATCTGGCCACATTATTGAACACTCTCAACATGGGCAC 985 Query 38226 TATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACT 38285 | |||||| || |||| || | || ||| |||| || || || |||||| | | Sbjct 984 CAAACCATTCGAAGTGCCATTAGTGCCATCAATAGAAGTGCCTTTGGCGCGTATA-CAAT 926 Query 38286 TATCGACAAT-CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTAT 38344 | | || || || || || || ||| || || | ||| ||||||| | | | Sbjct 925 GAACATTGATGCCAATACCGCCGGCTGATTTGGAAATCATAGCACATTGTTCGACAGATT 866 Query 38345 CAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAG 38404 || ||||| |||||| ||| | || | || | |||||| || | ||| | Sbjct 865 TGAAAATACCCTCTATAGAATCAGCTACCATAGTTAAGAGGAAACAAGATGATAGTTGGG 806 Query 38405 G-CAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGAC 38463 | | | | || | ||| ||| || || || || |||||| | || || ||||||| Sbjct 805 GTCTGTTG-GTGGCCGCGGCAAACAAAGTTGGCGAAGCATGTGTAAAATATCTTTCCGAT 747 Query 38464 AAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACC 38523 || |||||||||| ||||| | ||||||||| | || || ||||| | || || Sbjct 746 AATAAATTATATGTCTCTATGGCTGAATCTATATCCTCACCATGTATACCAATCGACACG 687 Query 38524 CTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGAT 38583 | ||||| |||||| ||||||||||| | || || || | ||| || | ||||||| Sbjct 686 CGCATTAACATATGCTGTGGTCTTTCCACAATCTTGCCATGCATTTTCAGCAAATACGAT 627 Query 38584 TTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 |||| || ||||| | ||||||||| | || | |||| | ||| || Sbjct 626 CTTTCCAAAGTTTTAAACCCAAAATAATTGTAACCAAAATCACGATCATA 577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466841478242000