Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq282627 363 2e-95 seq22934 98.7 1e-15 >seq282627 Length=1296 Score = 363 bits (402), Expect = 2e-95 Identities = 765/1126 (68%), Gaps = 20/1126 (2%) Strand=Plus/Minus Query 65972 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 66031 ||| ||| ||| |||| || ||||| |||| | || |||||||||| | ||||| Sbjct 1281 ATATAATTCTTCAAACTTTTCGCCCCATACATCATGCAGACCAGGACATTTGTGGGGACA 1222 Query 66032 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 66091 ||| || ||||| || || | |||| |||| ||||||||| ||||| || ||||| || Sbjct 1221 CATTAAAGACCAATCACCATTTTCCTCAACTCTTTTCATAAATAGATCTGGTATCCATAG 1162 Query 66092 AGC-TATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT-TTTAAGATCG 66149 ||| || ||| | |||||| | | || ||| || || || ||||| || |||||| || Sbjct 1161 AGCGTAGAAA-AGATCTCTAGCGCGATTTTCTTCCTTGCCAGTATTTTTCTTTAAG-TCT 1104 Query 66150 AGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGT 66209 | || | | |||||| ||||||| || ||||| || | ||| | | | ||||| ||| Sbjct 1103 AAAAATTCAAAAATATCCGAATGCCAAGGCTCCAAATAGACGGCAAAAGCACCAGGACGT 1044 Query 66210 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 66269 || || ||||| || | ||||| || ||||| | ||||||||||| || | Sbjct 1043 TTACCACCACCCTGGTCGACATATCTGGCCACATTATTGAACACTCTCAACATGGGCACC 984 Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTA 66329 | |||||| || || ||||| || || ||| | | || | || || ||| | | Sbjct 983 AAACCATTCGAAGTGCCATTAGTGCCATCAATAGAAGTGCCTTTGGCGCGTATACAATGA 924 Query 66330 A--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 66387 | ||||| || || || || || ||| || || | || ||| ||| | | | Sbjct 923 ACATTGATG--CCAATACCGCCGGCTGATTTGGAAATCATAGCACATTGTTCGACAGATT 866 Query 66388 CATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGG 66446 | || ||||||||| |||| | | ||| |||||| |||| || | || | |||| Sbjct 865 TGAAAATACCCTCTATAGAATCAGCTACCATAGTTAAGAGGAAACAAGAT-GATAGTTGG 807 Query 66447 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 66506 | | | || |||| ||| || || || ||||| || ||||| || |||| || Sbjct 806 GGTCTGTTGGTGGCCGCGGCAAACAAAGTTGGCGAAGCATGTGTAAAATATCTTTCCGAT 747 Query 66507 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACA 66566 | || ||| || ||||| || ||||| ||||||||| ||| || || | | || Sbjct 746 AATAAATTATATGTCTCTATGGCTGAATCTATATCCTCACCATGTATACCAATCGACACG 687 Query 66567 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGAT 66626 ||||||||||| ||||| |||||||| || |||||| | ||||||| ||| || ||| Sbjct 686 CGCATTAACATATGCTGTGGTCTTTCCACAATCTTGCCATGCATTTTCAGCAAATACGAT 627 Query 66627 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 66686 |||||||||||||||| |||||||| ||||| ||| || || || |||||||| | Sbjct 626 CTTTCCAAAGTTTTAAACCCAAAATAATTGTAACCAAAATCACGATCATAAATAATGGCA 567 Query 66687 GAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAAT--ACTT--GAAATAAT 66742 || || | | | || || ||| | || | ||| ||||| | || || || || Sbjct 566 GAATTTAATCTCTCGGCATTTTTTTGCACAA----CATTGTAATGAAATTCAGATATCAT 511 Query 66743 CGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACT 66802 || || | ||| ||| ||| ||| | || ||||| || || || Sbjct 510 AGGCGATGCCCTGCCAGTTTCTTTATTCACAAATTTATGCAAATCACTTATAACCTCCGA 451 Query 66803 AAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGC 66862 ||||| |||||| ||||| || || | ||| ||||||||||| | |||||| | || || Sbjct 450 AAATACTTTTTTAGTTTCCTTATGCAAATTGGATACGGCTATACGAGCGGCCAATATAGC 391 Query 66863 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 66922 ||||| ||| | || || | |||||||| ||||||| |||| | | || | ||| Sbjct 390 GTAATCACCATGATTGGTGGTTAAGGTGGCTGCAGTTTCGGCCGCCAAATTATCGAGTTC 331 Query 66923 TACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATC 66982 || ||||||||| ||| | ||| | ||| || || | | ||| | |||||| Sbjct 330 CTGTGTAGTTACTCCACAATACAATCCATTGATTACTTTAAGCGTTATGGCCACAGGATC 271 Query 66983 TATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAA 67042 | | ||| | || | ||||| || | |||| || || || |||||||||||||| Sbjct 270 GACAAAATCCATATTCAGCCCATAGCAAAGTTTTTGTATGCGCGAAGTGATTTTATCAAA 211 Query 67043 CATG-ACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 67087 ||| || | ||| ||| ||||| |||||| | ||||| | ||| Sbjct 210 -ATGTACCTCTTCTTTGCGTCCATCTCGTTTGAGTACAAAGAGTTT 166 >seq22934 Length=10236 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 31216 ATACCTAATTCCTTGACCTGAGTTAATGATCTCCAATCCATATTAGCGCTTCCTAAATAA 31275 || || ||||| ||||| || ||||| ||||||||||||||||| || || || | || Sbjct 4595 ATTCCCAATTCTTTGACTTGTGTTAAGGATCTCCAATCCATATTGGCACTACCGAGGTAT 4536 Query 31276 ATATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 31322 | |||| ||||||| || ||||||||||| ||||| | |||||||| Sbjct 4535 ACATGTTTATTATCGGAAATCCAAAATTTGGTATGCAAGACTCCTCC 4489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655808108537000