Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq282627 389 6e-103 seq22934 98.7 1e-15 >seq282627 Length=1296 Score = 389 bits (430), Expect = 6e-103 Identities = 769/1123 (68%), Gaps = 14/1123 (1%) Strand=Plus/Minus Query 79851 ATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACA 79910 ||||||| ||| |||| || ||||| ||||| | | |||||||||| || ||||| Sbjct 1281 ATATAATTCTTCAAACTTTTCGCCCCATACATCATGCAGACCAGGACATTTGTGGGGACA 1222 Query 79911 CATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 79970 ||| || ||||| || |||| |||| |||| ||||||||| ||||| || ||||| || Sbjct 1221 CATTAAAGACCAATCACCATTTTCCTCAACTCTTTTCATAAATAGATCTGGTATCCATAG 1162 Query 79971 AGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT-TTTAAGATCG 80028 ||| || ||| |||||||| | | || || || || || ||||| || |||||| || Sbjct 1161 AGCGTAGAAA-AGATCTCTAGCGCGATTTTCTTCCTTGCCAGTATTTTTCTTTAAG-TCT 1104 Query 80029 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGT 80088 | || | | |||||| |||||||| || ||||| || | ||| | | | || || ||| Sbjct 1103 AAAAATTCAAAAATATCCGAATGCCAAGGCTCCAAATAGACGGCAAAAGCACCAGGACGT 1044 Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 || || ||||| || | ||||| || ||||| | ||||||||||| || | Sbjct 1043 TTACCACCACCCTGGTCGACATATCTGGCCACATTATTGAACACTCTCAACATGGGCACC 984 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208 | |||||| || || ||||| || || ||| | | || |||| || ||| | | Sbjct 983 AAACCATTCGAAGTGCCATTAGTGCCATCAATAGAAGTGCCTTTGGCGCGTATACAATGA 924 Query 80209 --ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 80266 |||||| || || || || || ||| || || | || ||| ||| | | | Sbjct 923 ACATTGAT--GCCAATACCGCCGGCTGATTTGGAAATCATAGCACATTGTTCGACAGATT 866 Query 80267 CATAGATGCCCTCTATGCTATCATCAATCAT-GTTAAGTAGAAAACAGCTAGACATTTGG 80325 | || |||||||| |||| | | ||| |||||| || ||||| || | |||| Sbjct 865 TGAAAATACCCTCTATAGAATCAGCTACCATAGTTAAG-AGGAAACAAGATGATAGTTGG 807 Query 80326 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC 80385 | | | || |||| ||| || || || ||||| || ||||| || |||| || Sbjct 806 GGTCTGTTGGTGGCCGCGGCAAACAAAGTTGGCGAAGCATGTGTAAAATATCTTTCCGAT 747 Query 80386 AGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACA 80445 | || ||| || ||||| || ||||| ||||||||| ||| || || | || || Sbjct 746 AATAAATTATATGTCTCTATGGCTGAATCTATATCCTCACCATGTATACCAATCGACACG 687 Query 80446 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGAT 80505 ||||||||||| ||||| |||||||| || |||||| || ||||||| ||| || ||| Sbjct 686 CGCATTAACATATGCTGTGGTCTTTCCACAATCTTGCCATGCATTTTCAGCAAATACGAT 627 Query 80506 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 80565 |||||||||||||||| |||||||| ||||| ||| || || || |||||||| | Sbjct 626 CTTTCCAAAGTTTTAAACCCAAAATAATTGTAACCAAAATCACGATCATAAATAATGGCA 567 Query 80566 GAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATACT-TGAAATAATCGG 80624 || || | | | || || ||| | || |||| | ||| | | || || || || Sbjct 566 GAATTTAATCTCTCGGCATTTTTTTGCACAACAT-TGTAATGAAATTCAGATATCATAGG 508 Query 80625 AGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAA 80684 || | ||| ||| ||| ||| | || ||||| || || || ||| Sbjct 507 CGATGCCCTGCCAGTTTCTTTATTCACAAATTTATGCAAATCACTTATAACCTCCGAAAA 448 Query 80685 TAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATA 80744 || |||||| |||||||| || | ||| ||||||||||| | ||||| || || || || Sbjct 447 TACTTTTTTAGTTTCCTTATGCAAATTGGATACGGCTATACGAGCGGCCAATATAGCGTA 388 Query 80745 ATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTAC 80804 ||| ||| | || || | |||||||| ||||||| |||| | | || | ||| Sbjct 387 ATCACCATGATTGGTGGTTAAGGTGGCTGCAGTTTCGGCCGCCAAATTATCGAGTTCCTG 328 Query 80805 CGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTAT 80864 || ||||||||| ||| | ||| | ||| || || | | ||| | |||||| | Sbjct 327 TGTAGTTACTCCACAATACAATCCATTGATTACTTTAAGCGTTATGGCCACAGGATCGAC 268 Query 80865 ATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACAT 80924 | ||| | || | ||||| || | |||| || || || |||||||||||||| || Sbjct 267 AAAATCCATATTCAGCCCATAGCAAAGTTTTTGTATGCGCGAAGTGATTTTATCAAA-AT 209 Query 80925 G-ACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 80966 | || | ||| ||| ||||| |||||| | ||||| | ||| Sbjct 208 GTACCTCTTCTTTGCGTCCATCTCGTTTGAGTACAAAGAGTTT 166 >seq22934 Length=10236 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 44991 ATACCCAATTCCTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAA 45050 || |||||||| ||||| || |||| |||||||||||||| || || || || | || Sbjct 4595 ATTCCCAATTCTTTGACTTGTGTTAAGGATCTCCAATCCATATTGGCACTACCGAGGTAT 4536 Query 45051 ATATGTGTATTATCGGATATCCAAAATTTTGTATGAAGAACTCCTCC 45097 | |||| |||||||||| ||||||||||| ||||| | |||||||| Sbjct 4535 ACATGTTTATTATCGGAAATCCAAAATTTGGTATGCAAGACTCCTCC 4489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715688194877000