Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq282627 363 2e-95 seq22934 95.1 2e-14 >seq282627 Length=1296 Score = 363 bits (402), Expect = 2e-95 Identities = 763/1125 (68%), Gaps = 18/1125 (2%) Strand=Plus/Minus Query 71934 ATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACA 71993 ||||||| ||| |||| || ||||| ||| | | |||||||||| | ||||| Sbjct 1281 ATATAATTCTTCAAACTTTTCGCCCCATACATCATGCAGACCAGGACATTTGTGGGGACA 1222 Query 71994 CATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 72053 ||| || ||||| || |||| || | |||| ||||||||| ||||| || ||||| || Sbjct 1221 CATTAAAGACCAATCACCATTTTCCTCAACTCTTTTCATAAATAGATCTGGTATCCATAG 1162 Query 72054 AGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT-TTTAAGATCG 72111 ||| || ||| |||||||| | | || || || || || ||||| || |||||| || Sbjct 1161 AGCGTAGAAA-AGATCTCTAGCGCGATTTTCTTCCTTGCCAGTATTTTTCTTTAAG-TCT 1104 Query 72112 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGT 72171 | || | | |||||| |||||||| || ||||| || | ||| | | | || || ||| Sbjct 1103 AAAAATTCAAAAATATCCGAATGCCAAGGCTCCAAATAGACGGCAAAAGCACCAGGACGT 1044 Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231 || || ||||| || | ||||| || ||||| | ||||||||||| || | Sbjct 1043 TTACCACCACCCTGGTCGACATATCTGGCCACATTATTGAACACTCTCAACATGGGCACC 984 Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TGC 72289 | |||||| || | ||||| || || ||| | | || |||| || ||| || Sbjct 983 AAACCATTCGAAGTGCCATTAGTGCCATCAATAGAAGTGCCTTTGGCGCGTATACAATGA 924 Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349 |||||| || || || || || ||| || || | || ||| ||| | | | Sbjct 923 ACATTGATG--CCAATACCGCCGGCTGATTTGGAAATCATAGCACATTGTTCGACAGATT 866 Query 72350 CATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGG 72408 | || ||||||||| |||| | | ||| |||||| |||| || | || | |||| Sbjct 865 TGAAAATACCCTCTATAGAATCAGCTACCATAGTTAAGAGGAAACAAGAT-GATAGTTGG 807 Query 72409 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC 72468 | | | || |||| ||| || || || ||||| || ||||| || |||| || Sbjct 806 GGTCTGTTGGTGGCCGCGGCAAACAAAGTTGGCGAAGCATGTGTAAAATATCTTTCCGAT 747 Query 72469 AGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACA 72528 | || ||| || ||||| || ||||| ||||||||| |||||| || | || || Sbjct 746 AATAAATTATATGTCTCTATGGCTGAATCTATATCCTCACCATGTATACCAATCGACACG 687 Query 72529 CGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGAT 72588 ||||||||||||||||| |||||||| || |||||| || ||||||| ||| || ||| Sbjct 686 CGCATTAACATATGCTGTGGTCTTTCCACAATCTTGCCATGCATTTTCAGCAAATACGAT 627 Query 72589 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 72648 |||||||||||||||| |||||||| ||||| ||| || || || |||||||| | Sbjct 626 CTTTCCAAAGTTTTAAACCCAAAATAATTGTAACCAAAATCACGATCATAAATAATGGCA 567 Query 72649 GAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGAT--ACTT--GAAATAAT 72704 ||||| | | | || || ||| | || | ||| || || | || || || || Sbjct 566 GAATTTAATCTCTCGGCATTTTTTTGCACAA----CATTGTAATGAAATTCAGATATCAT 511 Query 72705 CGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACT 72764 || || | ||| ||| ||| ||| | || ||||| || || || Sbjct 510 AGGCGATGCCCTGCCAGTTTCTTTATTCACAAATTTATGCAAATCACTTATAACCTCCGA 451 Query 72765 AAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGC 72824 ||||| |||||| |||||||| || | ||| ||||||||||| | ||||| | || || Sbjct 450 AAATACTTTTTTAGTTTCCTTATGCAAATTGGATACGGCTATACGAGCGGCCAATATAGC 391 Query 72825 ATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTC 72884 ||||| ||| | || || | |||||||| |||| || |||| | | || | ||| Sbjct 390 GTAATCACCATGATTGGTGGTTAAGGTGGCTGCAGTTTCGGCCGCCAAATTATCGAGTTC 331 Query 72885 TACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATC 72944 || ||||||||| ||| | ||| | ||| || || | | ||| | |||||| Sbjct 330 CTGTGTAGTTACTCCACAATACAATCCATTGATTACTTTAAGCGTTATGGCCACAGGATC 271 Query 72945 TATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAA 73004 | | ||| | || | ||||| || | |||| || || || |||||||||||||| Sbjct 270 GACAAAATCCATATTCAGCCCATAGCAAAGTTTTTGTATGCGCGAAGTGATTTTATCAAA 211 Query 73005 CATAACATTTTCCCGGCATCCATTTCGTTTAACGACAAACATTTT 73049 || | ||| || ||||| |||||| | ||||| | ||| Sbjct 210 ATGTACCTCTTCTTTGCGTCCATCTCGTTTGAGTACAAAGAGTTT 166 >seq22934 Length=10236 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 36474 ATACCCAATTCCTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAA 36533 || |||||||| ||||| || |||| |||||||||||||| || || || || | || Sbjct 4595 ATTCCCAATTCTTTGACTTGTGTTAAGGATCTCCAATCCATATTGGCACTACCGAGGTAT 4536 Query 36534 ATATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 36580 | |||| ||||||| || ||||||||||| ||||| | |||||||| Sbjct 4535 ACATGTTTATTATCGGAAATCCAAAATTTGGTATGCAAGACTCCTCC 4489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668727922693000