Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq285928 104 5e-17 seq234153 98.7 2e-15 >seq285928 Length=2047 Score = 104 bits (114), Expect = 5e-17 Identities = 262/389 (67%), Gaps = 22/389 (6%) Strand=Plus/Plus Query 238314 TCACCGTGGTTACATTTCGGTCATATATCTGCTCAACGTGTAGTTTTAGA-----AACAT 238368 ||||| ||||| ||||| ||||| || |||| ||||||| || || || |||| Sbjct 511 TCACCCTGGTTTCATTTTGGTCAAATTTCTGTTCAACGTTGTGTCTTGGAGGTTAAACAA 570 Query 238369 TAAAATATAAGAGTATACATCCTAAATCTGTAAGCGTATTTTTAGACGAAATCATCATAA 238428 || || || | ||| || | |||| ||| | |||| || ||| || | Sbjct 571 TATAA-ATCAAAGTCTAAAG----AATCGGTAGAGGCGTTTTGTGAAGAAGCAATTGTGC 625 Query 238429 GACGTGAACTAGCTGATAATTTTTGCTATTATAATAAAAGATATGAT--TCTATAGAATC 238486 || | ||| | || ||||| ||||| ||||||||||||| || || |||| || || Sbjct 626 GAAGAGAATTGGCCGATAACTTTTGTTATTATAATAAAAATTACGACAATCTAAAGGGTC 685 Query 238487 CACACATTCATGGGCACGAGAAACATTAGAAGCACAC-GTAAATGATAGAAGAAAATATA 238545 ||| | ||||| |||||||| | | ||| ||||| |||| | | | | Sbjct 686 TTCACGAT--TGGGCTGCCAAAACATTAAATGATCACCGTAAA-GATAAACGTAC---TC 739 Query 238546 TTTACTCTTTAAA--AC-AGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCG 238602 || || | | | || | | || || | ||||| ||| ||||||||||| | Sbjct 740 CTTGCTATACATACGACGAATTTGAAAGCTCTCGTACTCATGATGATCTATGGAATTCAG 799 Query 238603 CCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTA 238662 | || || ||| |||| | | ||| |||||||| |||| ||||| ||||||||||||| Sbjct 800 CACAAATTCAACTGGTTAAAGAAGGAAAAATGCACGGTTTTTTACGTATGTATTGGGCTA 859 Query 238663 AAAAGATACTTGAATGGACTAGATCTCCA 238691 |||||||| | |||||||| ||||||| Sbjct 860 AAAAGATATTGGAATGGACAGAATCTCCA 888 >seq234153 Length=1300 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 104401 ACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTC 104460 ||| ||||| | ||||| ||||||||||||| | ||| || || || || ||||| || Sbjct 555 ACCATCTTCCAACTGTTTACCAGCAAAAATTAAACGCTGCTGGTCTGGTGGAATTCCCTC 496 Query 104461 TTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGT 104520 ||| | ||||||||| |||| |||||||| | |||||| | ||| ||||| || | Sbjct 495 TTTGTTCTGAATCTTGGCTTAAACATTTTCGAAGGTATCAGAGGTTTCAACCTCAAGAAT 436 Query 104521 AATAGTCTTACCAGTAAGTGTT 104542 ||||||||| | || || ||| Sbjct 435 AATAGTCTTGCTCGTTAGGGTT 414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147158222471900