Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq282928 149 7e-31 seq279465 82.4 9e-11 >seq282928 Length=1330 Score = 149 bits (164), Expect = 7e-31 Identities = 265/386 (69%), Gaps = 18/386 (5%) Strand=Plus/Plus Query 164731 ATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT---------GATAATATT 164781 ||| | |||||||| || ||||| |||| ||| |||||||| | ||||| | Sbjct 1 ATTATCTTTGATGAAATCGATGCCATTTGTAAACAACGTGGTTCAGTAGCCGGTAATAGT 60 Query 164782 ATT---CATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTA 164838 | ||||| |||| || ||||| ||||| ||||||| |||||||| ||| | Sbjct 61 GGTGTCCATGACACAGTAGTAAATCAATTGCTAGCTAAAATTGATGGTGTCGAACAACTG 120 Query 164839 AATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTA 164898 ||||| |||||| || | || ||||| || || | |||| | ||||||||||||||| | Sbjct 121 AATAACATTTTAGTTATTGGAATGACAAATCGTCGTGATATGATTGATGATGCTTTAATG 180 Query 164899 CGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTT 164958 || |||||||| || ||| || |||| ||||| | | ||| | || | || ||| | Sbjct 181 CGTCCTGGTCGTTTGGAAGTGCAAATGGAAATCAGTCTGCCCAATGAACAGGGTCGCGTA 240 Query 164959 CAAATTTTAAAAGTTCATGTGGCTAAA---ATGAAATCCTGTGATATATTATCTCCCGAT 165015 |||||||| | ||| ||||| ||| | | | | | || | ||| Sbjct 241 CAAATTTTGGCTATCCAT---ACTAAACGTATGCGTGAGTTTAACAAAATAGCAAGTGAT 297 Query 165016 GTAGATTTAAATAAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGA 165075 || ||| || |||| ||||| |||||||| | ||||||||| ||| | || || Sbjct 298 GTCGATAACAAAGAAATTGCTGCGCTCACTAAAAACTTTAGTGGTGCCGAAATTGAAGGT 357 Query 165076 TTAGTAAGAGCCGCTCAATCAACCGC 165101 ||||| |||| |||||||| ||||| Sbjct 358 TTAGTTCGAGCAGCTCAATCTACCGC 383 >seq279465 Length=1048 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 19364 ATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGATTTATCGT 19423 || |||||||||||||| || | || ||||||||| || || ||||| |||||| Sbjct 440 ATTGGTGATAAGTTTGCCTCACGTCATGGTCAAAAAGGTACTTGCGGTATTCAATATCGT 381 Query 19424 CAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTAACCCACAT 19483 ||||| |||||| | ||| | || || ||| || ||| |||||||||| || || Sbjct 380 CAAGAGGATATGGCATTTTCCTGCGAAGGCTTAGCACCCGATATTATTATTAATCCTCAC 321 Query 19484 GCTTTTCCAAGTCGAATGAC 19503 ||| |||| ||| ||||| Sbjct 320 GCTATTCCCTCTCGTATGAC 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593731143630000