Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq224542 111 8e-20 seq183102 109 3e-19 seq136998 109 3e-19 seq75223 109 3e-19 seq87869 104 1e-17 >seq224542 Length=1022 Score = 111 bits (122), Expect = 8e-20 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| | || |||||||||| |||||||||| || ||||||||||||||||||| Sbjct 966 TAAAAAGTGAANTTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGG 907 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 906 CGCTCTAACCAACTGAGCTAATGGGCC 880 >seq183102 Length=2108 Score = 109 bits (120), Expect = 3e-19 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| | |||||||||| |||||||||| || ||||||||||||||||||| Sbjct 1064 TAAAAAATATACTTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGG 1005 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 1004 CGCTCTAACCAACTGAGCTAATGGGCC 978 >seq136998 Length=1454 Score = 109 bits (120), Expect = 3e-19 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| | | ||||||||||| |||||||||| || ||||||||||||||||||| Sbjct 428 TAAAAATTAATATTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGG 369 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 368 CGCTCTAACCAACTGAGCTAATGGGCC 342 >seq75223 Length=2158 Score = 109 bits (120), Expect = 3e-19 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| | |||||||||| |||||||||| || ||||||||||||||||||| Sbjct 552 TAAAAAATATACTTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGG 611 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 612 CGCTCTAACCAACTGAGCTAATGGGCC 638 >seq87869 Length=1227 Score = 104 bits (114), Expect = 1e-17 Identities = 89/109 (82%), Gaps = 10/109 (9%) Strand=Plus/Plus Query 11428 GAAATATAGAATTAATAA-----AAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTC 11480 |||||| ||||||||| ||||| || |||||||||| |||||||||| | Sbjct 426 GAAATA---AATTAATAACATGAAAAATAAATCGTTGGCCCATGGGGGGATCGAACCCGC 482 Query 11481 GACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 | ||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 483 GGCCTTCGCGTTATTAGCACGGCGCTCTAACCAACTGAGCTAATGGGCC 531 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260575198369300