Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq282627 127 5e-24 >seq282627 Length=1296 Score = 127 bits (140), Expect = 5e-24 Identities = 400/618 (65%), Gaps = 4/618 (1%) Strand=Plus/Plus Query 363434 ATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATT 363493 |||| | ||||| ||| | || ||||||||||||||||| || | |||||||| ||| Sbjct 647 ATGGCAAGATTGTGGAAAGACCACAGCATATGTTAATGCGCGTGTCGATTGGTATACATG 706 Query 363494 GCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGC 363553 | |||| | ||| | || || || |||||||| | || | | || || | Sbjct 707 GTGAGGATATAGATTCAGCCATAGAGACATATAATTTATTATCGGAAAGATATTTTACAC 766 Query 363554 ACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTC 363613 | || ||||||| ||| || | || | || || | || ||||| || | Sbjct 767 ATGCTTCGCCAACTTTGTTTGCCGCGGCCACCAACAGACCCCAACTATCATCTTGTTTCC 826 Query 363614 TTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTC 363673 | ||| ||| | ||||| || |||||||| || | | | | | |||||| Sbjct 827 TCTTAACTATGGTAGCTGATTCTATAGAGGGTATTTTCAAATCTGTCGAACAATGTGCTA 886 Query 363674 TTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAA-- 363731 | |||||||| || ||||| ||||| ||| || || ||| || | || Sbjct 887 TGATTTCCAAATCAGCCGGCGGTATTGGC--ATCAATGTTCATTGTATACGCGCCAAAGG 944 Query 363732 CAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTT 363791 || || ||| ||||| || |||||||| |||| |||||| | | ||||| Sbjct 945 CACTTCTATTGATGGCACTAATGGCACTTCGAATGGTTTGGTGCCCATGTTGAGAGTGTT 1004 Query 363792 TGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTAT 363851 | ||| || || || |||||||||||||| || || || || || ||||| | Sbjct 1005 CAATAATGTGGCCAGATATGTCGACCAGGGTGGTGGTAAACGTCCTGGTGCTTTTGCCGT 1064 Query 363852 GTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGG 363911 ||| | |||||| ||| | ||||||||||| ||| | || | |||||| || || Sbjct 1065 CTATTTGGAGCCTTGGCATTCGGATATTTTTGAATTTTTAGACTTAAAGAAAAATACTGG 1124 Query 363912 AAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTAT 363971 || || ||| || || | ||||| ||||| || || ||| | | || | ||||| Sbjct 1125 CAAGGAAGAAAATCGCGCTAGAGATCTTTTCTACGCTCTATGGATACCAGATCTATTTAT 1184 Query 363972 GAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCT 364031 ||| | || |||| | | ||||||| | | || || ||| ||||||| ||||| Sbjct 1185 GAAAAGAGTTGAGGAAAATGGTGATTGGTCTTTAATGTGTCCCCACAAATGTCCTGGTCT 1244 Query 364032 TTCCGATGTATGGGGTGA 364049 ||||||||||| || Sbjct 1245 GCATGATGTATGGGGCGA 1262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1298553827266350