Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq59646 102 5e-17 seq225788 98.7 7e-16 seq170994 95.1 8e-15 seq93667 95.1 8e-15 >seq59646 Length=1394 Score = 102 bits (112), Expect = 5e-17 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 1274 TCTCTATTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCATG 1215 Query 20008 GTAATATTTAG 20018 || |||||||| Sbjct 1214 GTTATATTTAG 1204 >seq225788 Length=1140 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 402 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 461 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 462 GGTTATATTTAG 473 >seq170994 Length=1646 Score = 95.1 bits (104), Expect = 8e-15 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 965 CTCTCTATTCACAGTTCTTTTCAACTTTCCCTCACGGAACTTGTTTACTATCGGTCTCAT 1024 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 1025 GGTTATATTTAG 1036 >seq93667 Length=1249 Score = 95.1 bits (104), Expect = 8e-15 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 257 CTCTCTATTCACAGTTCTTTTCAACTTTCCCTCACGGAACTTGTTTACTATCGGTCTCAT 198 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 197 GGTTATATTTAG 186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333773882575175