Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq282627 376 3e-99 seq22934 98.7 1e-15 >seq282627 Length=1296 Score = 376 bits (416), Expect = 3e-99 Identities = 768/1126 (68%), Gaps = 20/1126 (2%) Strand=Plus/Minus Query 62983 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACA 63042 ||| ||| ||| |||| || ||||| |||| | ||| |||||||||| | ||||| Sbjct 1281 ATATAATTCTTCAAACTTTTCGCCCCATACATCATGCAGACCAGGACATTTGTGGGGACA 1222 Query 63043 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63102 ||| || ||||| || || | |||| |||| ||||||||| ||||| || ||||| || Sbjct 1221 CATTAAAGACCAATCACCATTTTCCTCAACTCTTTTCATAAATAGATCTGGTATCCATAG 1162 Query 63103 AGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT-TTTAAGATCG 63160 ||| || ||| |||||||| | | || ||| || || || ||||| || |||||| || Sbjct 1161 AGCGTAGAAA-AGATCTCTAGCGCGATTTTCTTCCTTGCCAGTATTTTTCTTTAAG-TCT 1104 Query 63161 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGT 63220 | || | | |||||| |||||||| || ||||| || | ||| | | | ||||| ||| Sbjct 1103 AAAAATTCAAAAATATCCGAATGCCAAGGCTCCAAATAGACGGCAAAAGCACCAGGACGT 1044 Query 63221 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63280 || || ||||| || | ||||| || ||||| | ||||||||||| || | Sbjct 1043 TTACCACCACCCTGGTCGACATATCTGGCCACATTATTGAACACTCTCAACATGGGCACC 984 Query 63281 ATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTA 63340 | |||||| || || ||||| || || ||| | | || |||| || ||| | | Sbjct 983 AAACCATTCGAAGTGCCATTAGTGCCATCAATAGAAGTGCCTTTGGCGCGTATACAATGA 924 Query 63341 --ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 63398 |||||| || || || || || ||| || || | || ||| ||| | | | Sbjct 923 ACATTGAT--GCCAATACCGCCGGCTGATTTGGAAATCATAGCACATTGTTCGACAGATT 866 Query 63399 CATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGG 63457 | || ||||||||| |||| | | ||| |||||| || ||||| || | |||| Sbjct 865 TGAAAATACCCTCTATAGAATCAGCTACCATAGTTAAG-AGGAAACAAGATGATAGTTGG 807 Query 63458 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAA 63517 | | | || |||| ||| || || || ||||| || ||||| || |||| || Sbjct 806 GGTCTGTTGGTGGCCGCGGCAAACAAAGTTGGCGAAGCATGTGTAAAATATCTTTCCGAT 747 Query 63518 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACA 63577 | || ||| || ||||| || ||||| ||||||||| ||| || || | | || Sbjct 746 AATAAATTATATGTCTCTATGGCTGAATCTATATCCTCACCATGTATACCAATCGACACG 687 Query 63578 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGAT 63637 ||||||||||| ||||| |||||||| || |||||| | ||||||| ||| || ||| Sbjct 686 CGCATTAACATATGCTGTGGTCTTTCCACAATCTTGCCATGCATTTTCAGCAAATACGAT 627 Query 63638 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 63697 |||||||||||||||| |||||||| ||||| ||| || || || |||||||| | Sbjct 626 CTTTCCAAAGTTTTAAACCCAAAATAATTGTAACCAAAATCACGATCATAAATAATGGCA 567 Query 63698 GAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAAT--ACTT--GAAATAAT 63753 || || | | | || || ||| | || | ||| ||||| | || || || || Sbjct 566 GAATTTAATCTCTCGGCATTTTTTTGCACAA----CATTGTAATGAAATTCAGATATCAT 511 Query 63754 AGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACT 63813 ||| | | ||| ||| ||| ||| | || ||||| || || || Sbjct 510 AGGCGATGCCCTGCCAGTTTCTTTATTCACAAATTTATGCAAATCACTTATAACCTCCGA 451 Query 63814 AAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGC 63873 ||||| |||||| ||||| || || | ||| ||||||||||| | |||||| | || || Sbjct 450 AAATACTTTTTTAGTTTCCTTATGCAAATTGGATACGGCTATACGAGCGGCCAATATAGC 391 Query 63874 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 63933 ||||| ||| | || || | |||||||| ||||||| |||| | | || | ||| Sbjct 390 GTAATCACCATGATTGGTGGTTAAGGTGGCTGCAGTTTCGGCCGCCAAATTATCGAGTTC 331 Query 63934 TACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATC 63993 || ||||| ||| ||| | ||| | ||| || || | | ||| | |||||| Sbjct 330 CTGTGTAGTTACTCCACAATACAATCCATTGATTACTTTAAGCGTTATGGCCACAGGATC 271 Query 63994 TATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAA 64053 | | ||| | || | ||||| || | |||| || || || |||||||||||||| Sbjct 270 GACAAAATCCATATTCAGCCCATAGCAAAGTTTTTGTATGCGCGAAGTGATTTTATCAAA 211 Query 64054 CATG-ACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 64098 ||| || | ||| ||| ||||| |||||| | ||||| | ||| Sbjct 210 -ATGTACCTCTTCTTTGCGTCCATCTCGTTTGAGTACAAAGAGTTT 166 >seq22934 Length=10236 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 27512 ATACCTAATTCCTTGACCTGAGTTAATGATCTCCAATCCATATTAGCGCTTCCTAAATAA 27571 || || ||||| ||||| || ||||| ||||||||||||||||| || || || | || Sbjct 4595 ATTCCCAATTCTTTGACTTGTGTTAAGGATCTCCAATCCATATTGGCACTACCGAGGTAT 4536 Query 27572 ATATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 27618 | |||| ||||||| || ||||||||||| ||||| | |||||||| Sbjct 4535 ACATGTTTATTATCGGAAATCCAAAATTTGGTATGCAAGACTCCTCC 4489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631355479030000