Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq32258 131 2e-25 seq276971 129 7e-25 seq116553 125 8e-24 seq97841 125 8e-24 seq236961 116 4e-21 seq19881 102 9e-17 >seq32258 Length=1764 Score = 131 bits (144), Expect = 2e-25 Identities = 95/108 (88%), Gaps = 4/108 (4%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 142 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 201 Query 126324 TGGGTTCGAACCCCACACCTGACAAATT--ATTATTGGAATTTTTGTT 126369 |||||||||||||||||||||||||| | || |||| |||||||| Sbjct 202 TGGGTTCGAACCCCACACCTGACAAAGTACATGATTGTTTTTTTTGTT 249 Score = 127 bits (140), Expect = 2e-24 Identities = 79/84 (94%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 1539 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 1598 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 1599 TGGGTTCGAACCCCACACCTGACA 1622 >seq276971 Length=1491 Score = 129 bits (142), Expect = 7e-25 Identities = 86/95 (91%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 128 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 187 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||||||||||||||| ||| || Sbjct 188 GTGGGTTCGAACCCCACACCTGACAAAGCATTTTT 222 >seq116553 Length=1013 Score = 125 bits (138), Expect = 8e-24 Identities = 92/105 (88%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 178 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 237 Query 126323 GTGGGTTCGAACCCCACACCTGACA-AATTATTATTGGAATTTTT 126366 ||||||||||||||||||||||||| || | |||| |||||| Sbjct 238 GTGGGTTCGAACCCCACACCTGACAGAAGTTGTATTTTTATTTTT 282 >seq97841 Length=1249 Score = 125 bits (138), Expect = 8e-24 Identities = 80/86 (93%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 1015 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 956 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||||| Sbjct 955 TGGGTTCGAACCCCACACCTGACAAA 930 >seq236961 Length=1197 Score = 116 bits (128), Expect = 4e-21 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||| ||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 1057 GTCAGATTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 998 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||| |||||||| Sbjct 997 TGGGTTCGAACCCCACATCTGACAAA 972 >seq19881 Length=1461 Score = 102 bits (112), Expect = 9e-17 Identities = 65/70 (93%), Gaps = 2/70 (3%) Strand=Plus/Minus Query 126282 GGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCG--GGAGCGTGGGTTCGAACCCCAC 126339 |||||||||||||||||||||| |||||||||| | |||||||||||||||||||||| Sbjct 635 GGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCGTGGGTTCGAACCCCAC 576 Query 126340 ACCTGACAAA 126349 |||||||||| Sbjct 575 ACCTGACAAA 566 Score = 100 bits (110), Expect = 3e-16 Identities = 64/69 (93%), Gaps = 2/69 (3%) Strand=Plus/Minus Query 126282 GGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCG--GGAGCGTGGGTTCGAACCCCAC 126339 |||||||||||||||||||||| |||||||||| | |||||||||||||||||||||| Sbjct 157 GGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCGTGGGTTCGAACCCCAC 98 Query 126340 ACCTGACAA 126348 ||||||||| Sbjct 97 ACCTGACAA 89 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554860103557000