Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq224003 87.8 2e-12 seq164653 87.8 2e-12 seq42005 87.8 2e-12 seq38195 86.0 7e-12 seq31437 86.0 7e-12 seq269666 84.2 2e-11 seq265969 84.2 2e-11 seq217362 84.2 2e-11 seq212471 84.2 2e-11 seq181557 84.2 2e-11 seq157121 84.2 2e-11 seq153449 84.2 2e-11 >seq224003 Length=1053 Score = 87.8 bits (96), Expect = 2e-12 Identities = 70/83 (84%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| ||| ||| || | | ||| |||||| ||||||||||||||||||||| ||| Sbjct 528 AAAAATATTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 469 Query 57057 CTCACCACTATACTACCGAGGAT 57079 || |||||||||||| ||||||| Sbjct 468 CTGACCACTATACTATCGAGGAT 446 >seq164653 Length=1008 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 149 TTTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 208 Query 57064 CTATACTACCGAGGAT 57079 |||||||| ||||||| Sbjct 209 CTATACTATCGAGGAT 224 >seq42005 Length=2522 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 544 TTTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 603 Query 57064 CTATACTACCGAGGAT 57079 |||||||| ||||||| Sbjct 604 CTATACTATCGAGGAT 619 Score = 87.8 bits (96), Expect = 2e-12 Identities = 70/83 (84%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 56998 AAAAATTT-TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| | ||||| || | | ||| |||||| ||||||||||||||||||||| ||| Sbjct 1702 AAAAATGTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1761 Query 57057 CTCACCACTATACTACCGAGGAT 57079 || |||||||||||| ||||||| Sbjct 1762 CTGACCACTATACTATCGAGGAT 1784 >seq38195 Length=1040 Score = 86.0 bits (94), Expect = 7e-12 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 56998 AAAAATTT-TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| | ||||| || | | ||| |||||| ||||||||||||||||||||| ||| Sbjct 354 AAAAATGTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 295 Query 57057 CTCACCACTATACTACCGAGGA 57078 || |||||||||||| |||||| Sbjct 294 CTGACCACTATACTATCGAGGA 273 >seq31437 Length=1615 Score = 86.0 bits (94), Expect = 7e-12 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 56998 AAAAATTT-TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| | ||||| || | | ||| |||||| ||||||||||||||||||||| ||| Sbjct 1367 AAAAATGTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1426 Query 57057 CTCACCACTATACTACCGAGGA 57078 || |||||||||||| |||||| Sbjct 1427 CTGACCACTATACTATCGAGGA 1448 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 334 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 393 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 394 ATACTATCGAGGAT 407 >seq269666 Length=1020 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 175 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 234 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 235 ATACTATCGAGGAT 248 >seq265969 Length=1181 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 631 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 572 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 571 ATACTATCGAGGAT 558 >seq217362 Length=1423 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 846 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 787 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 786 ATACTATCGAGGAT 773 >seq212471 Length=1028 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 213 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 154 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 153 ATACTATCGAGGAT 140 >seq181557 Length=1757 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1569 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 1510 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 1509 ATACTATCGAGGAT 1496 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 864 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 805 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 804 TACTATCGAGGAT 792 >seq157121 Length=1882 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1321 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 1262 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 1261 ATACTATCGAGGAT 1248 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 161 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 102 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 101 TACTATCGAGGAT 89 >seq153449 Length=1178 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 165 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 106 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 105 ATACTATCGAGGAT 92 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541261138262000