Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq287347 232 3e-55 seq286275 223 1e-52 seq284523 199 2e-45 seq284656 93.3 2e-13 seq234153 84.2 9e-11 >seq287347 Length=4972 Score = 232 bits (256), Expect = 3e-55 Identities = 460/670 (69%), Gaps = 31/670 (5%) Strand=Plus/Minus Query 450948 GTGTAGGTGTTTACCAAAATGGAAATGTAGAAATTATAGCAAATGACCAAGGATCACGAA 451007 |||| ||||||||| ||||||| ||| |||||||| || ||||| ||||| || | Sbjct 3015 GTGTTGGTGTTTACAAAAATGGTCGTGTTGAAATTATTGCCAATGATCAAGGCAACCGTA 2956 Query 451008 CTACTCCTTCATGGGTAAGTTTTACGGATTCAGAAAG---ACTTTTA---GGGCAAGCTG 451061 |||||| |||| || ||||| | | || | || |||| || | |||| Sbjct 2955 TTACTCCCTCATATGTTGCCTTTACAG---CCGACGGTGAACGTTTAATTGGTGACGCTG 2899 Query 451062 CTAAA--TCAATGGTAAATTCAAATGCCAAAAACACAGTATATGATGCTAAACGTTTAAT 451119 | ||| ||||| | || | ||| | |||| || || | ||||||||||||||| || Sbjct 2898 CCAAAAATCAATTGACAA--CCAATCCTGAAAATACCGTTTTTGATGCTAAACGTTTGAT 2841 Query 451120 TGGCCGTATGTATGATGATGATAC---TGTACAAAAAGAGAAAAAATTCTTTTCTTATGA 451176 ||| ||| | ||| | |||||| ||| ||| | || | |||||||| | | | | Sbjct 2840 TGGTCGT--GAATGGAG-TGATACAAATGTTCAACATGATATCAAATTCTTCCCCTTTAA 2784 Query 451177 TGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGT---AAATTATAAAGGTGAAACTAA 451233 || || | | || || || ||||| || || || | |||| ||| Sbjct 2783 AGTTGTTGAAAAGAACTCTAAACCGCATATTGCTGTCGAAACTTCTCAAGGCAAAAAGGT 2724 Query 451234 AACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 | ||||| |||||||||||||| |||||||| | |||||||| ||||| ||||| Sbjct 2723 A---TTTGCACCTGAAGAAATTTCTGCTATGGTTTTGGGAAAAATGAAGGAAACTGCAGA 2667 Query 451294 ACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGA 451353 | |||| | || || || |||| || | ||||| || ||||| || ||||| Sbjct 2666 AGCATATTTAGGCAAGAAGGTAACACATGCTGTCGTCACTGTACCTGCTTACTTTAATGA 2607 Query 451354 TGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAAT 451413 ||||||||| ||||| || |||||||| || |||||||| || |||||| | || || Sbjct 2606 TGCACAACGTCAAGCTACAAAAGATGCTGGCGTCATTGCTGGCTTGAATGTTATGCGTAT 2547 Query 451414 TATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGA 451473 ||||| || ||||| || |||||| | || || || | ||| || || || | Sbjct 2546 CATTAACGAGCCTACTGCCGCTGCTATTGCTTACGG-TTTGGACAA--GAAGGA---GGG 2493 Query 451474 AGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTC 451533 ||||| ||| | || || || ||||| ||||| || || ||| |||| | | | Sbjct 2492 TGAAAAGAATGTATTGGTTTTCGATTTGGGTGGTGGTACCTTCGATGTTTCTTTGTTGAC 2433 Query 451534 AATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGA 451593 |||||| |||| || |||||||| ||||||||||||||||||||| | || ||||| Sbjct 2432 AATTGATAATGGTGTCTTTGAAGTCGTGGCAACCAATGGTGATACTCACTTGGGTGGTGA 2373 Query 451594 AGATATTGAT 451603 |||| | ||| Sbjct 2372 AGATTTCGAT 2363 Score = 98.7 bits (108), Expect = 4e-15 Identities = 313/486 (64%), Gaps = 6/486 (1%) Strand=Plus/Minus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 || || || ||||||||||| ||||| ||||| |||||||| | | | || ||| Sbjct 1975 AACCCCGACGAAGCTGTTGCCTATGGCGCTGCTGTTCAAGCTGGTGTCCT------TTCT 1922 Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110 | ||| || | || | |||| | || | || || | ||| | || | || || Sbjct 1921 GGTGAACAAGATACAGACGCTATTGTCTTGCTTGACGTTAATCCTTTGACTATGGGTATT 1862 Query 452111 GAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAA 452170 ||||| | ||||| | ||||| || || ||| || ||| ||| || ||| Sbjct 1861 GAAACTGTCGGTGGTGTCATGACCAAATTGATTCCTCGCAATACTGTTATCCCCACTAAG 1802 Query 452171 AAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTT 452230 || ||||| || || || || || |||| ||| ||||||||||| | | Sbjct 1801 AAATCTCAAATCTTCTCAACCGCCTCGGACAATCAACACACTGTCACTATTCAAGTCTAT 1742 Query 452231 GAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAAC 452290 ||||| |||||| | ||||| ||| || || | | || |||| ||| | | Sbjct 1741 GAAGGTGAACGTCCTATGACCAAAGACAACCATTTATTGGGTAAATTCGATCTGACTGGC 1682 Query 452291 ATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAAT 452350 |||||||| || | || | ||||||||| ||| | | | || ||||||| || Sbjct 1681 ATTCCTCCAGCACCTCGTGGCATTCCTCAAATCGAAGTCAGTTTCGAAATTGATGCCAAC 1622 Query 452351 GGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAAATTACAATT 452410 ||||||||| | || ||||| | || || | || || ||||||||| ||| Sbjct 1621 GGTATTCTTCAAGTAAGTGCTGAAGACAAGGGTACAGGCAACAAGGAAAAAATTGTCATT 1562 Query 452411 ACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAA 452470 || || ||| |||| ||||| | |||||||| ||| ||| | | || || ||| Sbjct 1561 ACAAACGATCAAAATCGTTTGACACCCGAAGATATCGAACGTATGATCCACGATGCTGAA 1502 Query 452471 AAATTC 452476 |||||| Sbjct 1501 AAATTC 1496 >seq286275 Length=2250 Score = 223 bits (246), Expect = 1e-52 Identities = 474/700 (68%), Gaps = 17/700 (2%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || ||||| |||||| | || || |||| || || || ||||| | |||| |||| || Sbjct 137 GCTATTGGTATTGATTTGGGTACAACCTACTCTTGCGTGGGTGTATTCCAACATGGCAAA 196 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 ||||||||||| || || |||||||| || || || || |||| || || || Sbjct 197 GTAGAAATTATTGCCAACGACCAAGGTAATCGTACCACACCATCATATGTTGCCTTCACA 256 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAAA--TCAATGGTAAATTCAAATGCCAAAA 451091 || | ||| | ||| | || | ||||| ||| |||| || ||| | | || Sbjct 257 GACACTGAACGTCTTATTGGAGATGCTGCCAAAAATCAAGTCGCCATG--AATCCTACAA 314 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 | || | | ||||||||||||||| |||||||| | | ||| |||| || |||||| Sbjct 315 ATACCATCTTTGATGCTAAACGTTTGATTGGCCGCAAATTTGAAGATGCCACAGTACAAG 374 Query 451152 AAGAGA--AAAAATT--CTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATT 451207 || | ||| ||| | ||| ||||| || | | | || |||||| | || Sbjct 375 CTGATATGAAACATTGGCCCTTC----GATGTTGTCAGCGTAGATGGCAAGCCCAAAATC 430 Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 |||||| || || | ||||| || ||||| || ||||||||||| || |||||| Sbjct 431 CAAGTAGCCTACAAGGATGAAAAGAAGACTTTCTTCCCCGAAGAAATTTCTTCGATGGTT 490 Query 451268 CTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTA 451327 | | |||||||| ||||| || ||| || | || |||||| | |||| || Sbjct 491 TTGTCCAAAATGAAGGAAACCGCTGAAGCCTACTTGGGCAAACCAGTTTCAAATGCTGTC 550 Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG-ACA 451386 |||||||| || || || ||||||||| |||| || ||||| || || ||||| || ||| Sbjct 551 ATTACTGTGCCAGCCTACTTCAATGATTCACAGCGTCAAGCTACCAAGGATGCTGGTACA 610 Query 451387 TATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATA 451446 ||||||||||| || ||| | || || || || |||||||| || ||||| | || || Sbjct 611 -ATTGCTGGTTTGAACGTTTTGCGTATCATCAACGAACCTACCGCTGCTGCCATCGCTTA 669 Query 451447 TGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506 || || | || || | | | ||| ||| | | | || ||||| || || Sbjct 670 CGGTCTTGACAA---GAAGGCTGCTGGTGAACGCAATGTACTTATTTTCGATTTGGGCGG 726 Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566 || ||| |||| || | || || ||||| || || | || || || ||| | || Sbjct 727 TGGTACTTTTGATGTATCCATTCTCTCCATTGACGACGGCATCTTCGAGGTCAAGTCCAC 786 Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 |||||| || ||| | || ||||||||| | |||||| Sbjct 787 AGCTGGTGACACCCATTTGGGTGGTGAAGATTTCGATAAT 826 >seq284523 Length=1596 Score = 199 bits (220), Expect = 2e-45 Identities = 647/994 (65%), Gaps = 32/994 (3%) Strand=Plus/Plus Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 || ||||| ||||| || ||| ||| || | || | || |||||||| ||||| Sbjct 4 TTCGATTTGGGTGGTGGTACTTTTGACGTGTCCATTCTAACCATAGAAGATGGTATATTT 63 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATT 451612 || || || |||| ||| ||||||||| | || ||||||||| |||||||| || Sbjct 64 GAGGTCAAATCAACTGCTGGCGATACTCATTTGGGTGGTGAAGATTTTGATAATCGTATG 123 Query 451613 GTGGAATGGTTGAAAACTG-ATGTTCAACGAAAACTAAAAGTAGATATTTCTACTAACCA 451671 || ||| || | | | ||||||| |||| ||| |||| | | ||| | Sbjct 124 GTT-AATCATTTTGTTCAGGAATTTCAACGTAAACATAAAAAAGATCTCGCCGGCAACAA 182 Query 451672 AAAAGCACTTAGACGTCTTAAAACATCAGCAGAAAAAGCTAAAATTACACT--CAG-TTC 451728 | ||||| |||||| | || | || | |||||| ||| || | | ||| Sbjct 183 GAGGGCACTGAGACGTTTGCGTACCGCTTGTGAGAGAGCTAAGCGTACTCTTTCGGCTTC 242 Query 451729 AACACAAACTACTAGTATAAACATTGATAGTTTAGTTGATGGAATGGATTATGCTACTAC 451788 ||||| ||| | || | |||||| | | | ||||| || |||| | ||| | Sbjct 243 GTCACAAGCTA---GCATTGAAATTGATTCTCTCTTCGATGGTATTGATTTTTATACATC 299 Query 451789 TCTTACCCGTGCTAAATTTGAATCAATTTGTTCCAGT-ATTTTTGCACGGGTA--ATGAA 451845 | || |||||| |||||| | | | || || ||| | | || ||| | Sbjct 300 CATAACTCGTGCTCGTTTTGAAGAACTAAA---CGGTGATCTTTTTAGAGATACCATGGA 356 Query 451846 ACCTGTTGATCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGATGAAATTGT 451905 ||| || | ||| ||| |||| | ||||| ||||| |||| |||| ||||| Sbjct 357 ACCGGTGGCCAAAGCTATACGTGATGCCAAAATGGATAAAGCACAAATCCATGATATTGT 416 Query 451906 GCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCTTATTTTGG 451965 | || || || ||||| || || || ||| ||||| | | || || ||| Sbjct 417 TTTGGTTGGCGGCTCTACTCGTATACCAAAAGTTCAAAAACTTTTACAAGATTTTTTCAA 476 Query 451966 AGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGT 452025 |||||| || | ||| | ||||||||||| ||||| || |||||||| || || Sbjct 477 TGGAAAAGAATTGAATAAATCTATTAATCCTGATGAGGCTGTGGCTTATGGTGCAGCTGT 536 Query 452026 TCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGG-------AGATATTCTGT 452078 |||||| || || || || |||| ||| ||| |||| | | Sbjct 537 TCAAGCTGCCATATTATGTGG---AGAT----AAATCCGAGGCTGTTCAAGATCTGTTAC 589 Query 452079 TAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATT 452138 || ||||||| || || |||| | || ||||||| |||||||| | ||||| || Sbjct 590 TATTAGATGTCACTCCCTTATCGTTGGGTATTGAAACGGCTGGTGGTGTTATGACAGTTT 649 Query 452139 TAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGT- 452197 |||| ||||| ||| ||||||| |||| | | |||| || | || | | | Sbjct 650 TAATCAAACGCAATACTACTATTCCGACTAAACAAACTCAAGTGTTCACCAC--CTATTC 707 Query 452198 -GATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGA 452256 || || ||||| |||||| ||| ||||| |||||||| ||||| |||||||| ||| Sbjct 708 AGACAATCAACCTGGTGTACTTATCCAAGTCTTTGAAGGCGAACGAGCAATGACTAAAGA 767 Query 452257 TAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCC 452316 |||||| | | || ||||| | |||||||| ||| |||| ||| Sbjct 768 CAATAATCTATTGGGTAAATTTGAATTAAGTGGTATTCCTCCAGCTCCACGGGGTGTTCC 827 Query 452317 TCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGA 452376 ||||||||| |||| | ||| | || || || || ||| | ||||| | ||||||||| Sbjct 828 ACAAATTGAAGTTACATTCGATATCGACGCCAACGGAATTTTAAATGTAACTGCAGTTGA 887 Query 452377 AAAATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTATCTAA 452436 ||||||| || || | | ||||| |||||||| || || ||| ||| || ||| Sbjct 888 AAAATCAACTAATAAGGAAAACAAAATCACAATTACCAACGACAAAGGACGTCTAGGTAA 947 Query 452437 AGAAGATATTGAAAAAATGGTAGATGAAGCAGAA 452470 ||||||||||||| ||||| ||||||| ||| Sbjct 948 AGAAGATATTGAACGTATGGTTAATGAAGCGGAA 981 >seq284656 Length=1625 Score = 93.3 bits (102), Expect = 2e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 |||||||||||||| || || ||| | | |||| || | |||| || | || Sbjct 1589 AAAATGAAAGAAACTGCTGAGGCCTATTTAAATACTCCTGTCAAGAATGCTGTTGTAACC 1530 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 || || || |||||||||||| | ||||| ||||| || || ||||| || || |||||| Sbjct 1529 GTACCGGCCTATTTCAATGATTCGCAACGTCAAGCCACCAAGGATGCTGGTCAAATTGCT 1470 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 ||| | ||||| | || | || || ||||| || || |||||| | || || || Sbjct 1469 GGTCTTAATGTATTGCGTGTAATAAACGAACCCACCGCTGCTGCTTTGGCGTACGG 1414 >seq234153 Length=1300 Score = 84.2 bits (92), Expect = 9e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 391067 AACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTAT 391126 ||| || || | || ||||||| |||||| |||||| | ||||||| | | ||| | | Sbjct 414 AACCCTAACGAGCAAGACTATTATTCTTGAGGTTGAAACCTCTGATACCTTCGAAAATGT 473 Query 391127 TAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTC 391186 | || || ||||| | || || |||||||| || || || || ||||||||||| | Sbjct 474 TTAAGCCAAGATTCAGAACAAAGAGGGAATTCCACCAGACCAGCAGCGTTTAATTTTTGC 533 Query 391187 AGGGAAACAACTTGAAGATGG 391207 || ||||| | |||||||| Sbjct 534 TGGTAAACAGTTGGAAGATGG 554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1968442554591900