Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq287141 104 3e-17 >seq287141 Length=3511 Score = 104 bits (114), Expect = 3e-17 Identities = 343/520 (66%), Gaps = 14/520 (3%) Strand=Plus/Plus Query 154593 TTATGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGT 154652 |||||||| || || || | || || || || || || || | ||| | ||||| Sbjct 1757 TTATGTGAAATAACCGGATACGACAAAATTTCGTTTCAGCCCAATTCTGGAGCTCAGGGA 1816 Query 154653 GAGTATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGA-GATGATAAAAG 154711 || ||||| || || ||| || | | |||||| || ||| || || | | | | Sbjct 1817 GAATATGCTGGTCTAAGAGCGATACGAAGTTACCATGAAC-ATCGTGACGAAGGTCATCG 1875 Query 154712 AAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGC 154771 || ||||| |||| || || || |||||||| ||||| || || ||||| Sbjct 1876 CAACATATGTCTGATTCCCATATCTGCCCATGGAACCAATCCGGCATCCGCCCAAATGGC 1935 Query 154772 AGGGATGAAAGTTGTAGGTGTCAAGTGTGATGAT-GATGGTAACATAGACATCAAAGATC 154830 ||| |||||||| | | | | || | || ||||| | ||| ||||| | | Sbjct 1936 AGGTATGAAAGTCGAACCTATTC-GTATTCTGTCCGATGGAAGCATTGACATGGCTCACC 1994 Query 154831 TAGAGAAGAAAGCAATCATGAATAC--ATTTGAACTGTCATGTATTATGATTACATACCC 154888 || | |||||| |||| || | | | ||||| ||| ||||||| ||||| || Sbjct 1995 TACGTGACAAAGCAGC--TGAACACGCACGTAATCTGTCCTGTCTTATGATAACATATCC 2052 Query 154889 ATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCG--TTCAT-GA 154945 || ||| |||||||| ||| | || | | | || || | |||| ||||| || Sbjct 2053 CTCAACAATGGGTGTATTCGAAGAGA-CAGTCG-CTGACATTTGTGATCTAATTCATAGA 2110 Query 154946 CAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAA 155005 || ||||||||| |||||||| ||||| || ||| | || || ||||| || || Sbjct 2111 CA-TGGTGGTCAAGTATATCTAGATGGTGCCAATATGAACGCTCAGGTGGGTCTTTGTCG 2169 Query 155006 ACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCC 155065 ||| | || || ||| ||||| | || | || | || ||||| ||||||||||| Sbjct 2170 ACCTGGCGATTACGGTAGTGATGTTTCCCACTTGAATCTTCACAAAACTTTCTGTATTCC 2229 Query 155066 ACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTA 155105 ||||||||||| || || || | ||||| || || ||| Sbjct 2230 TCATGGAGGTGGGGGGCCCGGAATGGGTCCAATTGGCGTA 2269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577131797012000