Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq287141 136 5e-27 >seq287141 Length=3511 Score = 136 bits (150), Expect = 5e-27 Identities = 483/742 (65%), Gaps = 12/742 (2%) Strand=Plus/Plus Query 159045 ATATCATAGTGAGACTGACATGATGAGATATATCTATGAGTTAGCATCAAAAGATTTCTC 159104 ||| |||||||| | |||| || | ||||| | || | | | |||||| | || Sbjct 1534 ATACCATAGTGAATCACGCATGGTGCGCTATATGAAGAAGCTTGAAAATAAAGATATATC 1593 Query 159105 ATTAGTAAATGGTATGGTTCCACTTGGTAGTTGTACTATGAAACTAAACGCAGCATCAGA 159164 | ||| || ||| ||||||| ||| |||||||||||| |||| || || | || Sbjct 1594 GCTGGTACATTCAATGATTCCACTAGGTTCGTGTACTATGAAATTAAATGCTACAACTGA 1653 Query 159165 ACTGATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCTATGATACA 159224 | ||||||| || | | ||| | | | |||||| | ||||| || ||| Sbjct 1654 AATGATGCCATGCTCTTTTCGTCACTTTACCGATATCCATCCATTTGCACCTGTGGAACA 1713 Query 159225 GACCATGGGTTATCAAAAAATTATAGATGACTTACAGAAATGGTTATGTGATATCACAGG 159284 | |||||||| || | | || || | | |||||||| || || || Sbjct 1714 AGCTGAAGGTTATCATCGCATGTTCCAGGAGTTGGAAGACGATTTATGTGAAATAACCGG 1773 Query 159285 GTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTT 159344 | || || || || || || || | ||| | ||||| || ||||| || || Sbjct 1774 ATACGACAAAATTTCGTTTCAGCCCAATTCTGGAGCTCAGGGAGAATATGCTGGTCTAAG 1833 Query 159345 AGCAATCCAAGCATACCATCAAGGATCAGGA-GATGATAAAAGAAATGTATGTTTGATAC 159403 ||| || | | |||||| || ||| || || | | | | || ||||| |||| | Sbjct 1834 AGCGATACGAAGTTACCATGAAC-ATCGTGACGAAGGTCATCGCAACATATGTCTGATTC 1892 Query 159404 CAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAG 159463 | || || |||||||| ||||| ||||| || |||||||| |||||||| | | Sbjct 1893 CCATATCTGCCCATGGAACCAATCCGGCATCCGCCCAAATGGCAGGTATGAAAGTCGAAC 1952 Query 159464 GTGTCAAGTGTGATGAT-GATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGCAATC 159522 | | || | || ||||| | ||| ||||| | ||| | |||||| Sbjct 1953 CTATTC-GTATTCTGTCCGATGGAAGCATTGACATGGCTCACCTACGTGACAAAGCAGC- 2010 Query 159523 ATGAATAC--ATTTGAACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTAT 159580 |||| || | | | ||||| ||| ||||||| |||||||| || ||| ||||||| Sbjct 2011 -TGAACACGCACGTAATCTGTCCTGTCTTATGATAACATATCCCTCAACAATGGGTGTAT 2069 Query 159581 TTGAAACAAACA-TCAGACAGATATGTAAGATTGTTCATGAGA-ATGGTGGTCAGGTATA 159638 | ||| | ||| || | || ||| | | ||||| ||| |||||||||| ||||| Sbjct 2070 TCGAAG-AGACAGTCGCTGACATTTGTGATCTAATTCAT-AGACATGGTGGTCAAGTATA 2127 Query 159639 TCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGC 159698 ||| |||||||| ||| | || || ||||| ||||| ||| | || || ||| Sbjct 2128 TCTAGATGGTGCCAATATGAACGCTCAGGTGGGTCTTTGTCGACCTGGCGATTACGGTAG 2187 Query 159699 AGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCC 159758 ||||| | || | || | || || || ||||||||||| ||||||||||| || || Sbjct 2188 TGATGTTTCCCACTTGAATCTTCACAAAACTTTCTGTATTCCTCATGGAGGTGGGGGGCC 2247 Query 159759 TGGCGTAGGTCCTATTGGTGTA 159780 || | ||||| ||||| ||| Sbjct 2248 CGGAATGGGTCCAATTGGCGTA 2269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 585938442298000