Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq282627 343 2e-89 seq22934 95.1 1e-14 >seq282627 Length=1296 Score = 343 bits (380), Expect = 2e-89 Identities = 757/1128 (67%), Gaps = 39/1128 (3%) Strand=Plus/Minus Query 48104 TTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACA 48163 ||| ||||| |||||| | ||||| | || || | |||| || | |||||||| Sbjct 1293 TTCATATTTGCAATATAATTCTTCAAACTTTTCGCCCCATACATCATGCAGACCAGGACA 1234 Query 48164 TTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATC 48223 || | |||||||| || |||||||| ||| | | ||||| ||||||||| ||| Sbjct 1233 TTTGTGGGGACACATTAAAGACCAATCACCATTTTCCTCAACTCTTTTCATAAATAGATC 1174 Query 48224 TGGTATCCAAAGAGC-TATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCC 48282 ||||||||| ||||| || ||| | ||| |||| | |||||| |||||| |||| Sbjct 1173 TGGTATCCATAGAGCGTAGAAA-AGATCTCTAGCGCGATTTTCTTCCTTGCCAGTATTTT 1115 Query 48283 T-TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATT 48341 | |||||| || | ||| || | ||||| | |||||| || || ||||| | || | Sbjct 1114 TCTTTAAG-TCTAAAAATTCAAAAATATCCGAATGCCAAGGCTCCAAATAGACGGCAAAA 1056 Query 48342 ACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTT 48401 |||| || |||||| ||| || || || | ||||||||| ||| || | ||||| Sbjct 1055 GCACCAGGACGTTTACCACCACCCTGGTCGACATATCTGGCCACATTATTGAACACTCTC 996 Query 48402 AACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCT 48461 ||||| || || | |||||| || | ||||| || || |||| || | || | || Sbjct 995 AACATGGGCACCAAACCATTCGAAGTGCCATTAGTGCCATCAATAGAAGTGCCTTTGGCG 936 Query 48462 CTTATATTACTA--ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACC 48519 | |||| | | |||| || || ||||| || || ||| || || | |||||| Sbjct 935 CGTATACAATGAACATTG--ATGCCAATACCGCCGGCTGATTTGGAAATCATAGCACATT 878 Query 48520 GTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAAC 48579 ||| | | | |||| || |||||| |||| ||| |||| |||| || |||||| Sbjct 877 GTTCGACAGATTTGAAAATACCCTCTATAGAATCAGCTACCATAGTTAAGAGGAAACAAG 818 Query 48580 TAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACC 48639 || | ||| || || | | ||| || ||||| || ||||| |||| Sbjct 817 ATGATAGTTGGGGTCTGTTGGTGGCCGCGGCAAACAAAGTTGGCGAAGCATGTGTAAAAT 758 Query 48640 ATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATAC 48699 || | || ||||| || |||||||| || || | |||||||||||| |||||||| Sbjct 757 ATCTTTCCGATAATAAATTATATGTCTCTATGGCTGAATCTATATCCTCACCATGTATAC 698 Query 48700 CTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCA 48759 | || || || ||||||||||||| || |||||||| ||||| ||| || ||||||| Sbjct 697 CAATCGACACGCGCATTAACATATGCTGTGGTCTTTCCACAATCTTGCCATGCATTTTCA 638 Query 48760 AAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 | ||| ||| ||||||| |||||||| |||||||| ||||| ||| || ||||| Sbjct 637 GCAAATACGATCTTTCCAAAGTTTTAAACCCAAAATAATTGTAACCAAAATCACGATCAT 578 Query 48820 TAATAATTGATGAATTTATTCTTTCCTTATGTTTATATACTACAT--CCATTACATTTTT 48877 |||||| | ||||||| ||| || || ||| | || |||| || | | || Sbjct 577 AAATAATGGCAGAATTTAATCTCTCGGCATTTTTTTGCACAACATTGTAATGAAA--TTC 520 Query 48878 TGATATAAT---TGATTCCTTGTAAAGATC-TTCTACA-----------ACATCACT--- 48919 ||||| || ||| || || | || || | || | |||||| Sbjct 519 AGATATCATAGGCGATGCCCTGCCAGTTTCTTTATTCACAAATTTATGCAAATCACTTAT 460 Query 48920 ---------AAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGC 48970 ||||| |||||| ||||| ||||| | ||| |||| | ||| | ||| || Sbjct 459 AACCTCCGAAAATACTTTTTTAGTTTCCTTATGCAAATTGGATACGGCTATACGAGCGGC 400 Query 48971 TAATATAGCATAATCTGGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTAATAT 49030 |||||||| ||||| |||| | || || | || | |||| || || || | Sbjct 399 CAATATAGCGTAATCACCATGATTGGTGGTTAAGGTGGCTGCAGTTTCGGCCGCCAAATT 340 Query 49031 ATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACTTTCATTGCTATATT 49090 ||| | ||| | |||||||| || ||| | ||| | || ||||| | | ||| Sbjct 339 ATCGAGTTCCTGTGTAGTTACTCCACAATACAATCCATTGATTACTTTAAGCGTTATGGC 280 Query 49091 TACTGGATCTATATGATCCATATCCAGTCCATAACATAAtttttttATTCTAGATGTAAT 49150 || ||||| | | |||||||| ||| ||||| || | ||||| ||| | || || || Sbjct 279 CACAGGATCGACAAAATCCATATTCAGCCCATAGCAAAGTTTTTGTATGCGCGAAGTGAT 220 Query 49151 TTTATCAAACATTATATTCTCTTTACGACCGTCACGTTTTATAACAAA 49198 ||||||||| || | ||||| || || || ||||| | ||||| Sbjct 219 TTTATCAAAATGTACCTCTTCTTTGCGTCCATCTCGTTTGAGTACAAA 172 >seq22934 Length=10236 Score = 95.1 bits (104), Expect = 1e-14 Identities = 98/127 (77%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 17214 GTAATATTAATAGATACACCACATATATCTGTAAAATAATTACCTGTCCAATTTGATGTG 17273 |||||||||| | |||||| | |||| |||||||||| ||||| |||||||||||| Sbjct 5248 GTAATATTAAACCA-ACACCAGCTGTATCGGTAAAATAATCACCTGACCAATTTGATGTC 5190 Query 17274 CCAATATACGCAGTTTTATCAGTTACCATGTATTTTGCATGATTTACTCTTGAATAAGGA 17333 || ||||| ||| | ||||| || ||||| ||||| |||||| |||| || ||| Sbjct 5189 CCTATATAGGCAATATTATCCGTAACCATATATTTGTTATGATTAACTCGGCCATGGGGA 5130 Query 17334 ATAGGTG 17340 ||| ||| Sbjct 5129 ATATGTG 5123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560089248477000