Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq282627 168 3e-37 >seq282627 Length=1296 Score = 168 bits (186), Expect = 3e-37 Identities = 325/477 (68%), Gaps = 2/477 (0%) Strand=Plus/Minus Query 25892 GGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATC 25951 ||||| | |||| ||||||| |||||| ||||||| | | |||||||| |||||| ||| Sbjct 1226 GGACACATTAAAGACCAATCACCATTTTCCTCAACTCTTTTCATAAATAGATCTGGTATC 1167 Query 25952 CACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGA 26011 || | || || || | |||||| || | ||||||| || || ||| || |||| Sbjct 1166 CATAGAGCGTAGAAAAGATCTCTAGCGCGATTTTCTTCCTTGCCAGTATTTTTCTTTAAG 1107 Query 26012 TCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTT 26071 ||||| || ||||||||||| || ||||| || || ||||||| |||||| ||| Sbjct 1106 TCTAAAAATTCAAAAATATCCGAATGCCAAGGCTCCAAATAGACGGCAAAAGCACCAGGA 1047 Query 26072 CTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGA 26131 | ||| || ||||| || || || ||||| || | |||||| ||| ||||||| || Sbjct 1046 CGTTTACCACCACCCTGGTCGACATATCTGGCCACATTATTGAACACTCTCAACATGGGC 987 Query 26132 ACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCG 26191 || || ||| | ||| || || |||| || ||| | ||| | | | ||| Sbjct 986 ACCAAACCATTCGAAGTGCCATTAGTGCCATCAATAGAAGTGCCTTTGGCGCGTATACAA 927 Query 26192 TGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTA 26251 ||| ||| || || || || || || |||| ||||| ||||| | | || | Sbjct 926 TGAACATTGATGCCAATACCGCCGGCTGATTTGGAAATCATAGCACATTGTTCGACAGAT 867 Query 26252 TCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGC 26311 | |||||| || | ||| |||| || ||| ||| | |||||||| |||| ||| Sbjct 866 TTGAAAATACCCTCTATAGAATCAGCTACCATAGTTAAGAGGAAACAAGATGATAGTTG- 808 Query 26312 GAATGAGTT-GTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTC 26367 | | ||| || | | ||| || || || | |||||| ||| |||||| ||| Sbjct 807 GGGTCTGTTGGTGGCCGCGGCAAACAAAGTTGGCGAAGCATGTGTAAAATATCTTTC 751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252153602856875