Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq287141 118 1e-21 >seq287141 Length=3511 Score = 118 bits (130), Expect = 1e-21 Identities = 450/694 (65%), Gaps = 12/694 (2%) Strand=Plus/Minus Query 138182 TACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATG 138241 ||| ||||| ||||| | || || || ||||||||||| ||||||||||| || || || Sbjct 2269 TACGCCAATTGGACCCATTCCGGGCCCCCCACCTCCATGAGGAATACAGAAAGTTTTGTG 2210 Query 138242 TAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGC 138301 | ||| | || | ||||| ||| || || | ||| ||||| ||||| || Sbjct 2209 AAGATTCAAGTGGGAAACATCACTACCGTAATCGCCAGGTCGACAAAGACCCACCTGAGC 2150 Query 138302 ATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTC-ATGAACGATCTTACATA 138360 || | ||| |||||||| |||||||| ||||||||| |||| ||||| | | ||| | Sbjct 2149 GTTCATATTGGCACCATCTAGATATACTTGACCACCA-TGTCTATGAATTAGATCACAAA 2091 Query 138361 TCTGTCTGA-TGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACAT 138419 | | || ||| | ||| |||||||| || || |||||||| ||||||| ||| Sbjct 2090 TGTCAGCGACTGTCT-CTTCGAATACACCCATTGTTGAGGGATATGTTATCATAAGACAG 2032 Query 138420 GAGAGTTCAAAT--GTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGC 138477 || || | | | || |||| |||||| | ||| | ||||| ||| | | Sbjct 2031 GACAGATTACGTGCGTGTTCA--GCTGCTTTGTCACGTAGGTGAGCCATGTCAATGCTTC 1974 Query 138478 CATC-ATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGA 138536 |||| || | || | | | | |||||||| |||||||| || || ||| Sbjct 1973 CATCGGACAGAATAC-GAATAGGTTCGACTTTCATACCTGCCATTTGGGCGGATGCCGGA 1915 Query 138537 TTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATC-TCCTGATCC 138595 || |||||||| || || || |||||||||| || | | | | || || ||| Sbjct 1914 TTGGTTCCATGGGCAGATATGGGAATCAGACATATGTTGCGATGACCTTCGTCACGAT-G 1856 Query 138596 TTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGG 138655 || ||| || | | || ||| || || ||||| || ||||| | ||| | || || Sbjct 1855 TTCATGGTAACTTCGTATCGCTCTTAGACCAGCATATTCTCCCTGAGCTCCAGAATTGGG 1796 Query 138656 TTGTAATGATATAGAATCAAAACCTGTGATATCACATAACCATTTCTGTAAGTCATCTAT 138715 || || || || || | || || || |||||||| | | || || | | Sbjct 1795 CTGAAACGAAATTTTGTCGTATCCGGTTATTTCACATAAATCGTCTTCCAACTCCTGGAA 1736 Query 138716 TATCTTTTGATAACCCATGGTCTGTATCATAGGTGTATGTGGATGCACGTTGGCAAATTC 138775 || |||||||| | ||| || ||||| | |||||| | | || ||| | Sbjct 1735 CATGCGATGATAACCTTCAGCTTGTTCCACAGGTGCAAATGGATGGATATCGGTAAAGTG 1676 Query 138776 TTCCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTTCATTGTGCAACTACCAAG 138835 | || ||||||| ||| | || ||||||| |||||| || || ||| || Sbjct 1675 ACGAAAAGAGCATGGCATCATTTCAGTTGTAGCATTTAATTTCATAGTACACGAACCTAG 1616 Query 138836 TGGAACCATACCATTTACTAATGAGAAATCTTTA 138869 ||||| ||| || ||| | || | ||||||| Sbjct 1615 TGGAATCATTGAATGTACCAGCGATATATCTTTA 1582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576918167311000