Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq285983 129 2e-24 seq282627 118 3e-21 seq286948 111 5e-19 seq285794 109 2e-18 seq276451 86.0 2e-11 >seq285983 Length=2073 Score = 129 bits (142), Expect = 2e-24 Identities = 194/273 (71%), Gaps = 6/273 (2%) Strand=Plus/Minus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 ||||||| ||| || |||||||| ||||||||||| ||| | ||| |||||||| || Sbjct 1123 TTCCATAGCCTTTATCAAACGACGTTGAATATAACCGGTTTCGGCTGTCTTTACAGCAGT 1064 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCC 302693 |||||| ||||| |||||||||||||||| ||||| | | ||| ||| | || Sbjct 1063 ATCAATAAGACCTTCACGACCACCCATAGCGTGGAAATAGAATTCTGAGGGTGTCAAGCC 1004 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGT 302750 ||| | | || | || |||||||| | || || || || ||||||| ||| | Sbjct 1003 GGCAAGATATGAATTTTCTACGAAACCTCTCGATTCAGGACCGTAATCGTC---CTTAAT 947 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 || ||||||| ||| | || | || || || ||||| || || ||||||||||| Sbjct 946 GAAATGTGGCAAGGTACGCTTACGGAAACCATAAGGTATACGTTTACCTTCAACGTTCTG 887 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || |||| || | ||| | ||| || ||||| Sbjct 886 TTGACCCACACAAGCAATAACCTGGGAGATATT 854 >seq282627 Length=1296 Score = 118 bits (130), Expect = 3e-21 Identities = 396/612 (65%), Gaps = 21/612 (3%) Strand=Plus/Minus Query 155918 CATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCC---TTTGACTCCTC 155974 |||||||| ||| ||| | ||| |||||||| || || || ||| || || Sbjct 1185 CATAAATAGATCTGGTATCCATAGAGCGTAGAAAAGATCTCTAGCGCGATTT---TCTTC 1129 Query 155975 ATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAG 156034 | ||| ||| ||| || ||||| ||||| |||||| | ||| ||||||| Sbjct 1128 CTTGCCAGTATTTTTCTTTAAGTCTAAAAATTCAAAAATATCCGAATGCCAAGGCTCCAA 1069 Query 156035 ATACATAGCAAAACTACCATTCCTCTTGCCACC---CTGATCTACATACCGAGCAGTCTT 156091 ||| | |||||| |||| | || ||||| ||| || ||||| | || || Sbjct 1068 ATAGACGGCAAAAGCACCAGGACGTTTACCACCACCCTGGTCGACATATCTGGCCACATT 1009 Query 156092 ATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATG 156151 |||||| || | | ||| || | | |||||| ||||||||||| || || |||| Sbjct 1008 ATTGAACACTCTCAACATGGGCACCAAACCATTCGAAGTGCCATTAGTGCCATCAATAGA 949 Query 156152 CGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAAT 156211 | || | ||| | | ||||| || | |||||||| || | |||| ||||| Sbjct 948 AGTGCCTTTGGCGCGTATACAATGAACATTGATGCCAATACCGCCGGCTGATTTGGAAAT 889 Query 156212 TTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAG 156271 ||| |||| | |||| ||||||||||| || ||||||||| || |||| | || Sbjct 888 CATAGCACATTGTTCGACAGATTTGAAAATACCCTCTATAGAATCAGCTACCATAGTTAA 829 Query 156272 TAGATAGCACGAACTTAATTGAGGTC-GTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTG 156330 || | || || || ||| |||| || | || | ||| || | || || | | Sbjct 828 GAGGAAACAAGATGATAGTTGGGGTCTGTTG-GTGGCCGCGGCAAACAAAGTTGGCGAAG 770 Query 156331 CATGAATAAAATACTTATTAGACATATAATCGTATGTCTC-----CTTAATCTTCTCAAG 156385 |||| ||||||| | | || | ||| |||||||| || ||||| | Sbjct 769 CATGTGTAAAATATCTTTCCGATAATAAATTATATGTCTCTATGGCTGAATCT-----AT 715 Query 156386 ATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAAT 156445 || || || |||| || || || | ||| |||||||||| || | || ||||| Sbjct 714 ATCCTCACCATGTATACCAATCGACACGCGCATTAACATATGCTGTGGTCTTTCCACAAT 655 Query 156446 CACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAA 156505 | |||| ||| ||| | || | | ||||| |||||||||||| ||||||| | Sbjct 654 CTTGCCATGCATTTTCAGCAAATACGATCTTTCCAAAGTTTTAAACCCAAAATAATTGTA 595 Query 156506 CAGAAAATCACG 156517 ||||||||| Sbjct 594 ACCAAAATCACG 583 >seq286948 Length=3005 Score = 111 bits (122), Expect = 5e-19 Identities = 168/237 (71%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTT 289177 |||| || | | ||| ||||||| | | | | | | || | |||| ||| || |||| Sbjct 609 GACCTACCAAAACTTCATCAAATTCTGGACCAGCTGCATGGAAAAATGGTACGTTCGCTT 668 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || || || || |||| | || || ||||||||||| ||||| |||||| || Sbjct 669 CTCCGGCAACAGCTCTGGCCAATAAAGTTTTCCCTGTTCCAGGAGGTCCAACTAATAAAA 728 Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACT--TATATTTCTCAGGGCTCTTTAAAAATTC 289295 | || ||||||| |||| | || || | | | |||| ||||| | || || || || Sbjct 729 CACCTTTTGGTAATTTTCCACC--CAAATTAGAAAATTTTTCAGGATTTTTCAAGAACTC 786 Query 289296 TACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||||| ||| | | ||| | ||| || |||||||||||| ||||||| |||| || Sbjct 787 TACAACTTCTTTTAATTCTTGTTTGGCTTCATCACATCCTTTTACATCATCAAATGT 843 >seq285794 Length=1978 Score = 109 bits (120), Expect = 2e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || |||||||| ||||| |||||||| | | || |||| ||||| | || || | Sbjct 1476 CCGACAGCATCGATTTCATCAATGAACAGAATGCAAGGAGCATTTTTACGAGCCATAACG 1535 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | || | |||||| |||| |||| ||||||| ||||||||| ||||| || || Sbjct 1536 AACATATCGCGTACACGTGATGGACCAACACCAACAAACATTTCTAAGAATTCGGAGCCG 1595 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || || ||| |||| ||||| ||||| || ||| || | ||||| | || ||| Sbjct 1596 GAAACGGTAATAAATGGAACATTGGCTTCACCGGCTGTGGCTTTGGCCAGCATAGTTTTA 1655 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 || || ||||||||||| ||| | | || || |||| ||| || || Sbjct 1656 CCCGTGCCAGGTGGTCCAGTTAACATGGCACCTTTGGGTATTTTAGCACC 1705 >seq276451 Length=1123 Score = 86.0 bits (94), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 303620 CTTCATCTTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCT 303679 ||||| ||| |||| |||| |||||| |||||||| |||||||||||||| || | || Sbjct 407 CTTCACTTTGTGGCAAATGTGCATTCATTTCATCACCATCAAAATCAGCATTGTAGGCCT 348 Query 303680 TTGTGTCCGCAACGTTCATCCGGAAAG---TATCACCCTGCATCATAACACGGGCTTTAT 303736 | | || | | || ||||| | | ||||| || | || ||| ||||| | Sbjct 347 TACAATTCGAATAATGCAGACGGAATGTCTTTTCACCTTG---TAAAATACGAGCTTTGT 291 Query 303737 GACACATCATAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAAGCACGGGGTCACCGT 303796 || ||| || || ||| |||| | ||| |||||||| | | || | || |||| Sbjct 290 GAGCCATAATTGAAGGTCTATGTAACGATGGTTGACGATTAAGTAACAAGACATCGCCGT 231 Query 303797 TTAATACATGACGATGAAC 303815 ||| |||||||||||||| Sbjct 230 TTAGAACATGACGATGAAC 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1466397436212225