Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq285928 150 4e-31 >seq285928 Length=2047 Score = 150 bits (166), Expect = 4e-31 Identities = 277/400 (69%), Gaps = 12/400 (3%) Strand=Plus/Plus Query 198059 TTTATCTCCATGGTTACATTTTGGTCATGTATCTCCACAACGCGTTGCCTTAGAAGTATT 198118 ||| || || ||||| ||||||||||| | ||| ||||| || ||| || || Sbjct 507 TTTGTCACCCTGGTTTCATTTTGGTCAAATTTCTGTTCAACGTTGTGTCTTGGAGGTTAA 566 Query 198119 AAAATGTATACGAGAAAACaaaaaaaaCGTT-GAAACGTTTATAGATGAAATAATTATAA 198177 | ||| || | | || | ||| || || | || ||||| || ||| |||| | Sbjct 567 ACAATATAAATCA-AAGTCTAAAGAATCGGTAGAGGCGTTTTGTGAAGAAGCAATTGTGC 625 Query 198178 GAAGAGAACTGTCGGATAATTTTTGTTACTATAATAAACATTACGATAGCGTACAGTCTA 198237 |||||||| || | ||||| |||||||| ||||||||| ||||||| | || || | Sbjct 626 GAAGAGAATTGGCCGATAACTTTTGTTATTATAATAAAAATTACGACAATCTAAAGGGTC 685 Query 198238 CTCACGCATGGGCTAGAAGAACATTAGAAGATCACATTAATGATCCTAGAAAGTATATCT 198297 ||||| |||||| | ||||||| | |||||| ||| ||| || ||| || Sbjct 686 TTCACGATTGGGCTGCCAAAACATTAAATGATCACCGTAAAGATA----AACGTACTCCT 741 Query 198298 ATTCTATTAA----AC-AACTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATC 198352 | |||| | || || | |||| | || ||||| |||||||||| || | Sbjct 742 -TGCTATACATACGACGAATTTGAAAGCTCTCGTACTCATGATGATCTATGGAATTCAGC 800 Query 198353 GCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAA 198412 ||||| || || | | ||||||||||||||| |||||||| | ||||| |||||||| Sbjct 801 ACAAATTCAACTGGTTAAAGAAGGAAAAATGCACGGTTTTTTACGTATGTATTGGGCTAA 860 Query 198413 AAAGATACTTGAATGGACAAGAACACCGGAAGACGCTTTG 198452 ||||||| | ||||||||| | | || ||| | |||||| Sbjct 861 AAAGATATTGGAATGGACAGAATCTCCAGAACAGGCTTTG 900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 978211490937075