Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq285928 159 6e-34 >seq285928 Length=2047 Score = 159 bits (176), Expect = 6e-34 Identities = 279/400 (70%), Gaps = 12/400 (3%) Strand=Plus/Plus Query 182742 TTTATCTCCGTGGTTACATTTTGGACATGTATCTCCACAACGTGTTGCTTTAGAAGTATT 182801 ||| || || ||||| |||||||| || | ||| |||||| || || || || Sbjct 507 TTTGTCACCCTGGTTTCATTTTGGTCAAATTTCTGTTCAACGTTGTGTCTTGGAGGTTAA 566 Query 182802 AAAATGTATACGAGAAAACaaaaaaaaCGTT-GAAACGTTTATAGATGAAATAATTGTAA 182860 | ||| || | | || | ||| || || | || ||||| || ||| |||||| Sbjct 567 ACAATATAAATCA-AAGTCTAAAGAATCGGTAGAGGCGTTTTGTGAAGAAGCAATTGTGC 625 Query 182861 GAAGAGAACTATCGGATAATTTTTGTTACTATAATAAACATTACGATAGTGTTCAGTCTA 182920 |||||||| | | ||||| |||||||| ||||||||| ||||||| | | | || | Sbjct 626 GAAGAGAATTGGCCGATAACTTTTGTTATTATAATAAAAATTACGACAATCTAAAGGGTC 685 Query 182921 CTCACGCATGGGCTAGAAGAACATTAGAAGATCACGTTAATGATCCTAGAAAGTATATCT 182980 ||||| |||||| | ||||||| | |||||| ||| ||| || ||| || Sbjct 686 TTCACGATTGGGCTGCCAAAACATTAAATGATCACCGTAAAGATA----AACGTACTCCT 741 Query 182981 ATTCTATTAA----AC-AACTCGAAAAGGCAGAAACACATGACCCTCTATGGAATGCATC 183035 | |||| | || || | |||| | || ||||| |||||||||| || | Sbjct 742 -TGCTATACATACGACGAATTTGAAAGCTCTCGTACTCATGATGATCTATGGAATTCAGC 800 Query 183036 ACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAA 183095 |||||| || || | | ||||||||||||||| |||||||||| ||||| |||||||| Sbjct 801 ACAAATTCAACTGGTTAAAGAAGGAAAAATGCACGGTTTTTTACGTATGTATTGGGCTAA 860 Query 183096 AAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTTG 183135 ||||||| | ||||||||| | |||| ||| | |||||| Sbjct 861 AAAGATATTGGAATGGACAGAATCTCCAGAACAGGCTTTG 900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 900165412948000