Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq282627 149 1e-30 seq78403 84.2 5e-11 >seq282627 Length=1296 Score = 149 bits (164), Expect = 1e-30 Identities = 449/693 (65%), Gaps = 3/693 (0%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 |||||||| || |||||| | ||| | | ||||| || | ||||| |||| | Sbjct 601 TATTTTGGGTTTAAAACTTTGGAAAGATCGTATTTGCTGAAAATGCATGGCAAGATTGTG 660 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||| | || || || ||||| | || || |||||||||| ||||| | ||||| | Sbjct 661 GAAAGACCACAGCATATGTTAATGCGCGTGTCGATTGGTATACATGGTGAGGATATAGAT 720 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 | | || || ||| || ||||| ||| | || |||||| | || || Sbjct 721 TCAGCCATAGAGACATATAATTTATTATCGGAAAGATATTTTACACATGCTTCGCCAACT 780 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAAC 110543 | ||| ||| | || || || ||| | | ||||| || || || || Sbjct 781 TTGTTTGCCGCGGCCACCAACAGACCCCAACTATCATCTTGTTTCCTCTTAACTATGGTA 840 Query 110544 GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAAC 110603 | ||||||||| || ||||||| | || | || || |||| | ||||| ||| Sbjct 841 GCTGATTCTATAGAGGGTATTTTCAAATCTGTCGAACAATGTGCTATGATTTCCAAATCA 900 Query 110604 TCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACA 110663 | || || ||||| || | |||||| ||| ||| | ||||| | ||| | Sbjct 901 GCCGGCGGTATTGGCATCAATGTTCATTGTATACGCGCCAAAGGCACTTCTATTGATGGC 960 Query 110664 GCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAA 110723 | || || |||| | ||| | || || ||||| ||||| ||||| | || | | Sbjct 961 ACTAATGGCACTTCGAATGGTTTGGTGCCCATGTTGAGAGTGTTCAATAATGTGGCCAGA 1020 Query 110724 TATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGG 110780 ||||| | || |||||| || | ||| | ||||| ||||| | || |||||| Sbjct 1021 TATGTCGACCAGGGTGGTGGTAAACGTCCTGGTGCTTTTGCCGTCTATTTGGAGCCTTGG 1080 Query 110781 CATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGA 110840 ||||| ||||| |||||||| ||||| | |||||| || |||||| | | Sbjct 1081 CATTCGGATATTTTTGAATTTTTAGACTTAAAGAAAAATACTGGCAAGGAAGAAAATCGC 1140 Query 110841 GCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAA 110900 || | ||| | || || || | ||||| ||||| |||| |||||| | ||| | ||| Sbjct 1141 GCTAGAGATCTTTTCTACGCTCTATGGATACCAGATCTATTTATGAAAAGAGTTGAGGAA 1200 Query 110901 AATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGA 110960 ||||| |||||| | |||||||| || | ||||||||| |||||||| || Sbjct 1201 AATGGTGATTGGTCTTTAATGTGTCCCCACAAATGTCCTGGTCTGCATGATGTATGGGGC 1260 Query 110961 AAAGAGTTTGAAGACCTTTACGAAAAATATGAA 110993 || |||||||||| | || ||||||||| Sbjct 1261 GAAAAGTTTGAAGAATTATATTGCAAATATGAA 1293 >seq78403 Length=1045 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 167248 CACCAGCATTATCGAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTAC 167307 |||| |||||||| ||||| |||||||||||| || |||| ||||| | || | Sbjct 781 CACCTGCATTATCAAATTCGCCACAATAATTTGGTGCCGAGAATAGTGTAACGAGTTGCC 840 Query 167308 GATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 | || ||| |||||||||||||||||||| |||| ||| ||||| Sbjct 841 GTTTAGCAAAGAATTCATAACCATCTTCAACCACTTGATGAGCACG 886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1182442204240425