Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq282627 365 6e-96 seq22934 96.9 5e-15 >seq282627 Length=1296 Score = 365 bits (404), Expect = 6e-96 Identities = 745/1090 (68%), Gaps = 14/1090 (1%) Strand=Plus/Minus Query 69495 TTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACA 69554 |||||||| ||||| ||| || | || ||||| ||||||| || |||||||| Sbjct 1293 TTCATATTTGCAATATAATTCTTCAAACTTTTCGCCCCATACATCATGCAGACCAGGACA 1234 Query 69555 TTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATC 69614 || | |||||||| || ||||| || ||| |||| ||||| ||||||||||||||| Sbjct 1233 TTTGTGGGGACACATTAAAGACCAATCACCATTTTCCTCAACTCTTTTCATAAATAGATC 1174 Query 69615 GGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttt 69673 || ||||| ||||| || ||| |||||||| | | ||||||||| || || ||||||| Sbjct 1173 TGGTATCCATAGAGCGTAGAAA-AGATCTCTAGCGCGATTTTCTTCCTTGCCAGTATTTT 1115 Query 69674 t-tttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATG 69732 | |||||| || | ||| || | |||||| |||||||| || || | ||| | || | Sbjct 1114 TCTTTAAG-TCTAAAAATTCAAAAATATCCGAATGCCAAGGCTCCAAATAGACGGCAAAA 1056 Query 69733 ACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTC 69792 | || || |||||| || ||||| || | |||||||| ||||| | |||||| Sbjct 1055 GCACCAGGACGTTTACCACCACCCTGGTCGACATATCTGGCCACATTATTGAACACTCTC 996 Query 69793 AGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCG 69852 | ||| || | | |||||| || | ||||| || ||| |||| || | ||| | ||| Sbjct 995 AACATGGGCACCAAACCATTCGAAGTGCCATTAGTGCCATCAATAGAAGTGCCTTTGGCG 936 Query 69853 CGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT 69912 || ||| | || | | || || || || || ||| || || | |||||| || Sbjct 935 CGTATACAATGAACATTGATGCCAATACCGCCGGCTGATTTGGAAATCATAGCACATTGT 876 Query 69913 TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCT 69971 | | | | | ||||||||||| |||| ||| ||| ||||||| |||| || | Sbjct 875 TCGACAGATTTGAAAATACCCTCTATAGAATCAGCTACCATAGTTAAGAGGAAACAAGAT 816 Query 69972 AGACATTTGATG-ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACC 70030 || | ||| | ||| | || |||| ||| || || || || || || || || Sbjct 815 -GATAGTTGGGGTCTGT-TGGTGGCCGCGGCAAACAAAGTTGGCGAAGCATGTGTAAAAT 758 Query 70031 ATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAATT 70089 || |||| || | | ||| ||||| || || ||||| ||||||||| ||| ||| || Sbjct 757 ATCTTTCCGATAATAAATTATATGTCTCTATGGCTGAATCTATATCCTCAC-CATGTATA 699 Query 70090 CCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTC 70149 || |||| || ||||| ||||||||||| |||| ||| || | || || |||||| Sbjct 698 CCAATCGACACGCGCATTAACATATGCTGTGGTCTTTCCACAATCTTGCCATGCATTTTC 639 Query 70150 AACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCG 70209 | || || ||| |||||| |||||||||||||||||| ||||| ||| || | || Sbjct 638 AGCAAATACGATCTTTCCAAAGTTTTAAACCCAAAATAATTGTAACCAAAATCACGATCA 579 Query 70210 TAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAACAGTAGGT 70269 |||||||| ||||||||| | | || || ||| || | || ||| | | | Sbjct 578 TAAATAATGGCAGAATTTAATCTCTCGGCATTTTTTTGCACAACAT-TGTAA-TGAAATT 521 Query 70270 GAGATA--ATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGAATAAATCTTCCA 70327 ||||| || || ||| | ||| ||| ||| ||| | || ||||| | Sbjct 520 CAGATATCATAGGCGATGCCCTGCCAGTTTCTTTATTCACAAATTTATGCAAATCACTTA 461 Query 70328 TTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTG 70387 | || || ||||| |||||| |||||||| || ||||| |||| |||||| | || | Sbjct 460 TAACCTCCGAAAATACTTTTTTAGTTTCCTTATGCAAATTGGATACGGCTATACGAGCGG 401 Query 70388 CTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACG 70447 | | ||||| || ||| ||| | || || | || ||||| |||| || || || Sbjct 400 CCAATATAGCGTAATCACCATGATTGGTGGTTAAGGTGGCTGCAGTTTCGGCCGCCAAAT 341 Query 70448 TATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTT 70507 |||| | ||| || || ||||| ||| | || | || ||||| | | ||| Sbjct 340 TATCGAGTTCCTGTGTAGTTACTCCACAATACAATCCATTGATTACTTTAAGCGTTATGG 281 Query 70508 TGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCTAATACGAGATGTAA 70567 | |||||| | || || | ||||| ||||| || | |||| || || || || | Sbjct 280 CCACAGGATCGACAAAATCCATATTCAGCCCATAGCAAAGTTTTTGTATGCGCGAAGTGA 221 Query 70568 TTTTATCAAA 70577 |||||||||| Sbjct 220 TTTTATCAAA 211 >seq22934 Length=10236 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/163 (74%), Gaps = 5/163 (3%) Strand=Plus/Minus Query 34639 CCAATATACTTCAAAAATTTGAGTGAGATCGATGGCCAAGTTCGCGTTATTGAAGATGGC 34698 ||||||| ||||||| |||| | ||||| ||||| || ||| ||| | | | Sbjct 4656 CCAATATTCTTCAAATATTTTACCAAGATCTATGGCTAATGTCGAACAATTCATA--GCC 4599 Query 34699 AA--TTCCTAATTCCTTGACCTGTGTTAGAGAACGCCAATCCATATTAGCACTTCCTAGA 34756 || |||| ||||| ||||| ||||||| || | |||||||||||| ||||| || || Sbjct 4598 AAGATTCCCAATTCTTTGACTTGTGTTAAGGATCTCCAATCCATATTGGCACTACCGAGG 4539 Query 34757 TAAATGTGTGCATTATCCGATATCCAAAATTTTGTATG-AAGA 34798 || | ||| |||||| || ||||||||||| ||||| |||| Sbjct 4538 TATACATGTTTATTATCGGAAATCCAAAATTTGGTATGCAAGA 4496 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 34087 TGTATCTGTAAAGTAATTTCCTGTCCAATTTGATGTGCCTATATACGCCGTTTTATCTGT 34146 |||||| ||||| |||| |||| |||||||||||| |||||||| || | ||||| || Sbjct 5226 TGTATCGGTAAAATAATCACCTGACCAATTTGATGTCCCTATATAGGCAATATTATCCGT 5167 Query 34147 TACCATGTATTTGGCATGATTCACCCTGGAATATGGAATAGGTG 34190 ||||| |||||| |||||| || | | || |||||| ||| Sbjct 5166 AACCATATATTTGTTATGATTAACTCGGCCATGGGGAATATGTG 5123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684440865477000