Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq282928 120 2e-22 >seq282928 Length=1330 Score = 120 bits (132), Expect = 2e-22 Identities = 255/377 (68%), Gaps = 24/377 (6%) Strand=Plus/Plus Query 19567 GATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTG----TAAA--TGGAGTACAT 19620 |||||| | || || || ||||| ||| | ||||| | | ||| ||| || ||| Sbjct 10 GATGAAATCGATGCCATTTGTAAACAACGTGGTTCAGTAGCCGGTAATAGTGGTGTCCAT 69 Query 19621 GACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATT 19680 ||||| || || |||||| | || | ||| | || ||||| | ||||||||||| ||| Sbjct 70 GACACAGTAGTAAATCAATTGCTAGCTAAAATTGATGGTGTCGAACAACTGAATAACATT 129 Query 19681 TTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGT 19740 ||||||||||| ||||| ||| | | || | || || || ||| | || || ||| Sbjct 130 TTAGTTATTGGAATGACAAATCGTCGTGATATGATTGATGATGCTTTAATGCGTCCTGGT 189 Query 19741 CGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTA 19800 || |||||| | | || ||||| | | ||| ||||| || || || ||||||| Sbjct 190 CGTTTGGAAGTGCAAATGGAAATCAGTCTGCCCAATGAACAGGGTCGCGTACAAATTTTG 249 Query 19801 AACATACATACATCAAC-CATGCG--------ACAAAATAACCTTTTAAATGACGATGTA 19851 || ||||| | ||| ||||| |||||||| | || | ||||| Sbjct 250 GCTATCCATAC-TAAACGTATGCGTGAGTTTAACAAAATAGC-----AAGT---GATGTC 300 Query 19852 GATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTA 19911 ||| |||||||||| ||| || ||||||| ||| || || ||| |||| || ||| Sbjct 301 GATAACAAAGAAATTGCTGCGCTCACTAAAAACTTTAGTGGTGCCGAAATTGAAGGTTTA 360 Query 19912 GTGAGGGCCGCCCAATC 19928 || | || || ||||| Sbjct 361 GTTCGAGCAGCTCAATC 377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396063714737125