Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq282627 412 5e-110 seq22934 98.7 1e-15 >seq282627 Length=1296 Score = 412 bits (456), Expect = 5e-110 Identities = 771/1123 (69%), Gaps = 20/1123 (2%) Strand=Plus/Minus Query 77903 TTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCA 77962 |||||||| ||||| |||||| | || ||||| ||||||| || ||||| || Sbjct 1293 TTCATATTTGCAATATAATTCTTCAAACTTTTCGCCCCATACATCATGCAGACCAGGACA 1234 Query 77963 TTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATC 78022 || | || ||||| || ||||| ||||||| ||||| ||||| ||||||||| ||||| Sbjct 1233 TTTGTGGGGACACATTAAAGACCAATCACCATTTTCCTCAACTCTTTTCATAAATAGATC 1174 Query 78023 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTT 78082 |||||||||||||| || ||||||| | | || |||||| || || ||||| || Sbjct 1173 TGGTATCCATAGAGCGTAGAAAAGATCTCTAGCGCGATTTTCTTCCTTGCCAGTATTTTT 1114 Query 78083 -TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAA 78141 |||||| || | ||| || | |||||| |||||||| || || | ||| | || | | Sbjct 1113 CTTTAAG-TCTAAAAATTCAAAAATATCCGAATGCCAAGGCTCCAAATAGACGGCAAAAG 1055 Query 78142 CTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCA 78201 | ||||| |||||| ||| ||||| || | ||||||||| ||||| | ||||||| Sbjct 1054 CACCAGGACGTTTACCACCACCCTGGTCGACATATCTGGCCACATTATTGAACACTCTCA 995 Query 78202 ACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGC 78261 |||| || | | ||| || || || ||||| || ||| |||| || | || | |||| Sbjct 994 ACATGGGCACCAAACCATTCGAAGTGCCATTAGTGCCATCAATAGAAGTGCCTTTGGCGC 935 Query 78262 GAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTT 78321 | ||| | || || || || || || || || || || | ||| || ||| Sbjct 934 GTATACAATGAACATTGATGCCAATACCGCCGGCTGATTTGGAAATCATAGCACATTGTT 875 Query 78322 TCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTA 78380 | | | | | |||||||||||| ||| | | ||| ||||||| |||| || | Sbjct 874 CGACAGATTTGAAAATACCCTCTATAGAATCAGCTACCATAGTTAAGAGGAAACAAGAT- 816 Query 78381 GACATTTG----ATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAA 78436 || | ||| || || || | || ||| || || || || ||||| ||||| Sbjct 815 GATAGTTGGGGTCTGTTG----GTGGCCGCGGCAAACAAAGTTGGCGAAGCATGTGTAAA 760 Query 78437 CCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAAT 78496 || |||| || | || ||| ||||| || || ||||| ||||| ||| ||| || Sbjct 759 ATATCTTTCCGATAATAAATTATATGTCTCTATGGCTGAATCTATATCCTCACCATGTAT 700 Query 78497 TCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTT 78556 || | || || ||||| ||||||||||| |||||||| || |||| || ||||| Sbjct 699 ACCAATCGACACGCGCATTAACATATGCTGTGGTCTTTCCACAATCTTGCCATGCATTTT 640 Query 78557 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTC 78616 || ||| || ||| |||||||||||||||| |||||||| ||||| ||| || | || Sbjct 639 CAGCAAATACGATCTTTCCAAAGTTTTAAACCCAAAATAATTGTAACCAAAATCACGATC 580 Query 78617 GTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATAT--CCATGACAGTA 78674 |||||||| ||||||||| | | || | ||| |||| || |||| | | Sbjct 579 ATAAATAATGGCAGAATTTAATCTCTCGGCATTTTTTTGCACAACATTGTAATGAAATT- 521 Query 78675 GTTGAAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAAATCTTCC 78734 || || ||||| ||| ||| ||| ||| ||| | ||| ||||| Sbjct 520 -CAGATATCATAGGCGATGCCCTGCCAGTTTCTTTATTCACAAATTTATGCAAATCACTT 462 Query 78735 ATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCA 78794 || || || ||||| |||||| |||||||| || | ||| ||||| ||||| | || Sbjct 461 ATAACCTCCGAAAATACTTTTTTAGTTTCCTTATGCAAATTGGATACGGCTATACGAGCG 402 Query 78795 GCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAA 78854 || | ||||| |||||| ||| | || || | |||||||| |||| ||||| ||| Sbjct 401 GCCAATATAGCGTAATCACCATGATTGGTGGTTAAGGTGGCTGCAGTTTCGGCCGCCAAA 342 Query 78855 ATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGATT 78914 |||| | || || || || ||| ||| | ||| | || ||||| | ||| | Sbjct 341 TTATCGAGTTCCTGTGTAGTTACTCCACAATACAATCCATTGATTACTTTAA--GCGTTA 284 Query 78915 TTG--ACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCTAATACGAGATG 78972 | | |||||||| ||||| || | |||| ||||| || | |||| || || || | Sbjct 283 TGGCCACAGGATCGACAAAATCCATATTCAGCCCATAGCAAAGTTTTTGTATGCGCGAAG 224 Query 78973 TGATTTTATCAAATATAACATTCTCCTTGCATCCATTTCGTTT 79015 ||||||||||||| || | || |||| ||||| |||||| Sbjct 223 TGATTTTATCAAAATGTACCTCTTCTTTGCGTCCATCTCGTTT 181 >seq22934 Length=10236 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 43295 ATTCCCAATTCCTTGACCTGTGTTAGAGATCGCCAATCCATGTTAGCACTTCCTAAATAA 43354 ||||||||||| ||||| ||||||| |||| ||||||||| || ||||| || | || Sbjct 4595 ATTCCCAATTCTTTGACTTGTGTTAAGGATCTCCAATCCATATTGGCACTACCGAGGTAT 4536 Query 43355 ATATGTCTATTATCTGATATCCAAAATTTAGTATGAAGAACTCCACC 43401 | |||| ||||||| || ||||||||||| ||||| | ||||| || Sbjct 4535 ACATGTTTATTATCGGAAATCCAAAATTTGGTATGCAAGACTCCTCC 4489 Score = 89.7 bits (98), Expect = 7e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 42682 TGTATCGGTAAAGTAATTTCCTGTCCAATTTGATGTGCCTATATACGCCGTTTTATCGGT 42741 |||||||||||| |||| |||| |||||||||||| |||||||| || | ||||| || Sbjct 5226 TGTATCGGTAAAATAATCACCTGACCAATTTGATGTCCCTATATAGGCAATATTATCCGT 5167 Query 42742 TACCATATATTTTGCGTGATTTACTCGGGAATACGGAAT 42780 ||||||||||| ||||| |||||| || ||||| Sbjct 5166 AACCATATATTTGTTATGATTAACTCGGCCATGGGGAAT 5128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692172985252000