Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq282627 412 5e-110 seq22934 95.1 2e-14 >seq282627 Length=1296 Score = 412 bits (456), Expect = 5e-110 Identities = 771/1122 (69%), Gaps = 18/1122 (2%) Strand=Plus/Minus Query 76498 TTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACA 76557 |||||||| |||||| |||||| | || ||||| ||||||| || ||||||||| Sbjct 1293 TTCATATTTGCAATATAATTCTTCAAACTTTTCGCCCCATACATCATGCAGACCAGGACA 1234 Query 76558 TTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATC 76617 || | |||||||| || ||||| ||||||| ||||| ||| | ||||||||| ||||| Sbjct 1233 TTTGTGGGGACACATTAAAGACCAATCACCATTTTCCTCAACTCTTTTCATAAATAGATC 1174 Query 76618 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTT 76677 |||||||||||||| || ||||||| | | | |||||| || || ||||| || Sbjct 1173 TGGTATCCATAGAGCGTAGAAAAGATCTCTAGCGCGATTTTCTTCCTTGCCAGTATTTTT 1114 Query 76678 -TTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAA 76736 |||||| |||| || || | |||||| |||||||| || || | ||| | || | | Sbjct 1113 CTTTAAG-TCTAAAAATTCAAAAATATCCGAATGCCAAGGCTCCAAATAGACGGCAAAAG 1055 Query 76737 CACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCA 76796 |||| || |||||| ||| ||||| || | ||||||||| ||||| | ||||||| Sbjct 1054 CACCAGGACGTTTACCACCACCCTGGTCGACATATCTGGCCACATTATTGAACACTCTCA 995 Query 76797 ACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCAC 76856 |||| || | | || || || || ||||| || ||| |||| || | || || | Sbjct 994 ACATGGGCACCAAACCATTCGAAGTGCCATTAGTGCCATCAATAGAAGTGCCTTTGGCGC 935 Query 76857 GAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTT 76916 | ||| | || | | ||| || || || || ||| || || | |||||| ||| Sbjct 934 GTATACAATGAACATTGATGCCAATACCGCCGGCTGATTTGGAAATCATAGCACATTGTT 875 Query 76917 TCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTA 76975 | | | | || ||||||||| |||| | | ||| ||||||| |||| || | Sbjct 874 CGACAGATTTGAAAATACCCTCTATAGAATCAGCTACCATAGTTAAGAGGAAACAAGAT- 816 Query 76976 GACATTTG----ATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAA 77031 || | ||| || || || | || |||||| || || || ||||| || || Sbjct 815 GATAGTTGGGGTCTGTTG----GTGGCCGCGGCAAACAAAGTTGGCGAAGCATGTGTAAA 760 Query 77032 CCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAAT 77091 || |||| || | || ||| ||||| || || ||| ||||||||| ||| || Sbjct 759 ATATCTTTCCGATAATAAATTATATGTCTCTATGGCTGAATCTATATCCTCACCATGTAT 700 Query 77092 TCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTT 77151 || | | || ||||| ||||||||||| |||| ||| ||| |||| || ||||| Sbjct 699 ACCAATCGACACGCGCATTAACATATGCTGTGGTCTTTCCACAATCTTGCCATGCATTTT 640 Query 77152 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTC 77211 || ||| || ||| |||||||||||||||| |||||||| ||||| ||| || | || Sbjct 639 CAGCAAATACGATCTTTCCAAAGTTTTAAACCCAAAATAATTGTAACCAAAATCACGATC 580 Query 77212 GTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATAT--CCATGACAGTG 77269 |||||||| | ||||||| | | || || ||| |||| || |||| | | Sbjct 579 ATAAATAATGGCAGAATTTAATCTCTCGGCATTTTTTTGCACAACATTGTAATGAAATT- 521 Query 77270 GTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATAAGTCTTCC 77329 ||| || || || ||| | ||| ||| ||| ||| | ||| || || Sbjct 520 -CAGATATCATAGGCGATGCCCTGCCAGTTTCTTTATTCACAAATTTATGCAAATCACTT 462 Query 77330 ATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCA 77389 || || || ||||| |||||| |||||||| || | ||| ||||||||||| | ||| Sbjct 461 ATAACCTCCGAAAATACTTTTTTAGTTTCCTTATGCAAATTGGATACGGCTATACGAGCG 402 Query 77390 GCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAA 77449 || | || || || ||| ||| | || || |||||||||| |||| ||||| ||| Sbjct 401 GCCAATATAGCGTAATCACCATGATTGGTGGTTAAGGTGGCTGCAGTTTCGGCCGCCAAA 342 Query 77450 GTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATT 77509 |||| | ||| ||||| ||||| ||| | || | || ||||| | | ||| Sbjct 341 TTATCGAGTTCCTGTGTAGTTACTCCACAATACAATCCATTGATTACTTTAAGCGTTATG 282 Query 77510 TTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCTAATACGAGATGTG 77569 | |||||| ||||| || | |||| ||||| || | |||| || || || ||| Sbjct 281 GCCACAGGATCGACAAAATCCATATTCAGCCCATAGCAAAGTTTTTGTATGCGCGAAGTG 222 Query 77570 ATTTTATCAAACATG-ACATTCTCCTTACATCCATTTCGTTT 77610 ||||||||||| ||| || | || || | ||||| |||||| Sbjct 221 ATTTTATCAAA-ATGTACCTCTTCTTTGCGTCCATCTCGTTT 181 >seq22934 Length=10236 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/143 (76%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 41822 ATTCCCAATTCCTTAACCTGTGACAGAGATCTCCAATCCATATTAGCACTTCCTAAATAA 41881 ||||||||||| || || |||| | ||||||||||||||||| ||||| || | || Sbjct 4595 ATTCCCAATTCTTTGACTTGTGTTAAGGATCTCCAATCCATATTGGCACTACCGAGGTAT 4536 Query 41882 ATATGCATATTATCAGATATCCAAAATTTTGTGTG-AAGA--ACTCCACCCAGAATATTT 41938 | ||| ||||||| || ||||||||||| || || |||| |||||||||| | | Sbjct 4535 ACATGTTTATTATCGGAAATCCAAAATTTGGTATGCAAGACTCCTCCACCCAGTAAACGG 4476 Query 41939 GCAATATCTACATATCGAACTTC 41961 | || ||||| | | |||| ||| Sbjct 4475 GAAAAATCTAAAGAACGAATTTC 4453 Score = 86.0 bits (94), Expect = 9e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 41211 TATCTGTAAAGTAATTTCCTGTCCAATTTGATGTTCCTATATACGCAGTTTTATCCGTCA 41270 |||| ||||| |||| |||| |||||||||||| |||||||| ||| | |||||||| | Sbjct 5224 TATCGGTAAAATAATCACCTGACCAATTTGATGTCCCTATATAGGCAATATTATCCGTAA 5165 Query 41271 CCATATATTTTGCATGGTTTACTCTGGAATACGGAAT 41307 |||||||||| ||| || |||| | || ||||| Sbjct 5164 CCATATATTTGTTATGATTAACTCGGCCATGGGGAAT 5128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710372960376000