Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq8921 111 3e-19
seq871 107 4e-18
seq15316 91.5 3e-13
>seq8921
Length=5376
Score = 111 bits (122), Expect = 3e-19
Identities = 248/368 (67%), Gaps = 6/368 (2%)
Strand=Plus/Minus
Query 61098 ACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACTCCGTTTTAT 61157
||||| || ||||||| || || | |||| || ||| | |||| |||||| ||||||
Sbjct 3716 ACATCAGAGTTGTATGGCAAGGTGCGTGAAACGCCACAATCCGAAACGACTCCATTTTAT 3657
Query 61158 CCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGAT--TTGTAAAAATTACC 61215
|| || || ||||| || | || |||| ||| |||| ||| |||| || ||| |
Sbjct 3656 CCACGATCTCCTTATGGCGTATCGAAGCTATTCGCCTACTCGATCGTTGTTAA--TTATC 3599
Query 61216 GCGAGTCGTATGGAATGTTTGTATGTAACTCG-ATTTGTTTCAATCACGAGAGTCCCAAT 61274
| || | || | ||||| | ||| | | | ||| ||||||||| || || |
Sbjct 3598 GAGAAGCTTACGATATGTTCGC-TGTCAATGGGATTCTTTTCAATCATGAATCACCGAGA 3540
Query 61275 AGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATTTTTAACGGT 61334
|||||| | ||||||||| | ||||| || | ||||| || ||| | |||
Sbjct 3539 AGAGGTGAAACGTTTGTGACAAGAAAAATCACTCGAGGTGTTGCGAAAATTCATCTAGGT 3480
Query 61335 GTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGATATGCGGAA 61394
| | ||| || | || || || | || || ||| | |||||||| | || ||
Sbjct 3479 GAATTAGAATATATTGAGCTTGGTAATCTTGATTCCAAACGGGATTGGGGCCACGCAAAA 3420
Query 61395 GATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGATGACTACGTTATT 61454
||||| | || || |||||||||||| ||||||||||| ||||| || | || |||
Sbjct 3419 GATTACGTTGAAGCAATGTGGTTGATGATGCAACAAGATCAACCAGAAGATTTTGTCATT 3360
Query 61455 GCGACTGG 61462
|| || ||
Sbjct 3359 GCAACCGG 3352
>seq871
Length=12966
Score = 107 bits (118), Expect = 4e-18
Identities = 367/563 (65%), Gaps = 12/563 (2%)
Strand=Plus/Minus
Query 281466 ATGATTTTACCTTTGAACCCCTTGTACCACGGTTTCATTTCGACGAGGTCCTCTCCAGAT 281525
|||||| | |||| || || || |||||||| |||||||| | | || |
Sbjct 5429 ATGATTGTTCCTTGAAAACCTTTATACCACGGATTCATTTCCATTGGTTCTTGATTGCGC 5370
Query 281526 ATCAAACGCTTCACGTTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGAC 281585
|||||||| || | || |||||||| || | |||| ||| | || | || ||| |
Sbjct 5369 ATCAAACGTTTAATATTTTCTACGATAGCTCTAGGATCATAGTTCGGCACTTTGGTACTC 5310
Query 281586 CAACCGGTTCCAATACCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAA 281645
||||| || ||||| || | ||| || || |||| | || || || || ||||||
Sbjct 5309 CAACCAGTGCCAATTCCTTCAGCACCGTTCACTAAAACCATGGGAATGATTGGGACATAA 5250
Query 281646 CATTCTGGTTCAATTTTATCACCATCATCATACAAATACTTCAG--AAGGTT-ATCATCT 281702
|||| |||||||| | | |||||||||| || || || |||| | |||| |
Sbjct 5249 TATTCAGGTTCAATACGAAGATTGTCATCATACATGTAGTTAAGTAAAGGATCATCAAGT 5190
Query 281703 GTATCGACGAAAACCTGTCGCGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTC 281762
|| | || |||| | || | | || | || | ||||| ||||| | | ||
Sbjct 5189 GT-TGGA--AAAAGTTTTCTAGCCAAGGGACTGAGCATGGTGAAAATATAACGAGGGCTT 5133
Query 281763 GCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTA 281822
|| ||||| || || || || | | || || ||||| || ||| | ||
Sbjct 5132 GCAGCATCTTTGCCCCCTTGAAGTCGAGTACCGAATTGACCTAAAGGTTGCAATAAATTG 5073
Query 281823 ATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACC 281882
|| || ||||||||||| ||| ||||| | || | || || | | || |
Sbjct 5072 ATATTGTTGCTCCCGACAAAATTTTGAGCTAAATTAATTATGGTTGACATTAAAGACATT 5013
Query 281883 TCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCACG 281942
|| || |||||||||||||| |||| |||| ||||| | ||||||||| || ||
Sbjct 5012 TCGCCATGGTGATAGGCGCTAAGTTCACCAACGGAACCAGCCAGCTGTGCTACTTTGACT 4953
Query 281943 TCTGATGTCAAGTTGCGTTTGAAAGCGCAA-TATA-AT-ACTTTTCGTTGAGAAGGCTTG 281999
|| | | || ||||||||| ||| |||| || ||||||||||| ||| ||
Sbjct 4952 TCACGTTTATCATTACGTTTGAAA---CAAGTATAGATCACTTTTCGTTGGCCAGGTTTA 4896
Query 282000 AAACCATCAACGACAGACGGAAT 282022
|||||||| || | || |||||
Sbjct 4895 AAACCATCGACTAAGGAAGGAAT 4873
>seq15316
Length=18849
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 18201 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 18142
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 18141 CCCCACGTTGGGC 18129
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057568383441800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |