Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq8921 111 3e-19 seq871 107 4e-18 seq15316 91.5 3e-13 >seq8921 Length=5376 Score = 111 bits (122), Expect = 3e-19 Identities = 248/368 (67%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 61098 ACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACTCCGTTTTAT 61157 ||||| || ||||||| || || | |||| || ||| | |||| |||||| |||||| Sbjct 3716 ACATCAGAGTTGTATGGCAAGGTGCGTGAAACGCCACAATCCGAAACGACTCCATTTTAT 3657 Query 61158 CCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGAT--TTGTAAAAATTACC 61215 || || || ||||| || | || |||| ||| |||| ||| |||| || ||| | Sbjct 3656 CCACGATCTCCTTATGGCGTATCGAAGCTATTCGCCTACTCGATCGTTGTTAA--TTATC 3599 Query 61216 GCGAGTCGTATGGAATGTTTGTATGTAACTCG-ATTTGTTTCAATCACGAGAGTCCCAAT 61274 | || | || | ||||| | ||| | | | ||| ||||||||| || || | Sbjct 3598 GAGAAGCTTACGATATGTTCGC-TGTCAATGGGATTCTTTTCAATCATGAATCACCGAGA 3540 Query 61275 AGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATTTTTAACGGT 61334 |||||| | ||||||||| | ||||| || | ||||| || ||| | ||| Sbjct 3539 AGAGGTGAAACGTTTGTGACAAGAAAAATCACTCGAGGTGTTGCGAAAATTCATCTAGGT 3480 Query 61335 GTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGATATGCGGAA 61394 | | ||| || | || || || | || || ||| | |||||||| | || || Sbjct 3479 GAATTAGAATATATTGAGCTTGGTAATCTTGATTCCAAACGGGATTGGGGCCACGCAAAA 3420 Query 61395 GATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGATGACTACGTTATT 61454 ||||| | || || |||||||||||| ||||||||||| ||||| || | || ||| Sbjct 3419 GATTACGTTGAAGCAATGTGGTTGATGATGCAACAAGATCAACCAGAAGATTTTGTCATT 3360 Query 61455 GCGACTGG 61462 || || || Sbjct 3359 GCAACCGG 3352 >seq871 Length=12966 Score = 107 bits (118), Expect = 4e-18 Identities = 367/563 (65%), Gaps = 12/563 (2%) Strand=Plus/Minus Query 281466 ATGATTTTACCTTTGAACCCCTTGTACCACGGTTTCATTTCGACGAGGTCCTCTCCAGAT 281525 |||||| | |||| || || || |||||||| |||||||| | | || | Sbjct 5429 ATGATTGTTCCTTGAAAACCTTTATACCACGGATTCATTTCCATTGGTTCTTGATTGCGC 5370 Query 281526 ATCAAACGCTTCACGTTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGAC 281585 |||||||| || | || |||||||| || | |||| ||| | || | || ||| | Sbjct 5369 ATCAAACGTTTAATATTTTCTACGATAGCTCTAGGATCATAGTTCGGCACTTTGGTACTC 5310 Query 281586 CAACCGGTTCCAATACCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAA 281645 ||||| || ||||| || | ||| || || |||| | || || || || |||||| Sbjct 5309 CAACCAGTGCCAATTCCTTCAGCACCGTTCACTAAAACCATGGGAATGATTGGGACATAA 5250 Query 281646 CATTCTGGTTCAATTTTATCACCATCATCATACAAATACTTCAG--AAGGTT-ATCATCT 281702 |||| |||||||| | | |||||||||| || || || |||| | |||| | Sbjct 5249 TATTCAGGTTCAATACGAAGATTGTCATCATACATGTAGTTAAGTAAAGGATCATCAAGT 5190 Query 281703 GTATCGACGAAAACCTGTCGCGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTC 281762 || | || |||| | || | | || | || | ||||| ||||| | | || Sbjct 5189 GT-TGGA--AAAAGTTTTCTAGCCAAGGGACTGAGCATGGTGAAAATATAACGAGGGCTT 5133 Query 281763 GCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTA 281822 || ||||| || || || || | | || || ||||| || ||| | || Sbjct 5132 GCAGCATCTTTGCCCCCTTGAAGTCGAGTACCGAATTGACCTAAAGGTTGCAATAAATTG 5073 Query 281823 ATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACC 281882 || || ||||||||||| ||| ||||| | || | || || | | || | Sbjct 5072 ATATTGTTGCTCCCGACAAAATTTTGAGCTAAATTAATTATGGTTGACATTAAAGACATT 5013 Query 281883 TCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCACG 281942 || || |||||||||||||| |||| |||| ||||| | ||||||||| || || Sbjct 5012 TCGCCATGGTGATAGGCGCTAAGTTCACCAACGGAACCAGCCAGCTGTGCTACTTTGACT 4953 Query 281943 TCTGATGTCAAGTTGCGTTTGAAAGCGCAA-TATA-AT-ACTTTTCGTTGAGAAGGCTTG 281999 || | | || ||||||||| ||| |||| || ||||||||||| ||| || Sbjct 4952 TCACGTTTATCATTACGTTTGAAA---CAAGTATAGATCACTTTTCGTTGGCCAGGTTTA 4896 Query 282000 AAACCATCAACGACAGACGGAAT 282022 |||||||| || | || ||||| Sbjct 4895 AAACCATCGACTAAGGAAGGAAT 4873 >seq15316 Length=18849 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 18201 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 18142 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 18141 CCCCACGTTGGGC 18129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057568383441800