Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq4298 214 2e-50 >seq4298 Length=5336 Score = 214 bits (236), Expect = 2e-50 Identities = 600/901 (67%), Gaps = 24/901 (3%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 ||||| || |||| || || ||| |||||||||||||| |||||||| ||||| | | Sbjct 2295 ACACCACTTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAA 2236 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACCCCA 16781 || || | ||||||||| || ||||| | | || ||| |||| | | || | Sbjct 2235 GAGATCTGTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAA-ATTTGCCAACATCC-A 2178 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 | ||| | | || | ||| || |||| || || | | ||| || || || | Sbjct 2177 GCTCGACCAACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGA 2118 Query 16842 TTCCTAT-AAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCT 16900 |||| || ||| | || || | || || ||||||||| |||||| || | |||||| Sbjct 2117 TTCCGATCAAGGAG-ACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCT 2059 Query 16901 TCCTTAATAATACTAGCAACTCGTTCCTCG-GACGGTGTATGTTTAAGATGTTTA--AAC 16957 | | | ||| || | || | | || || ||| || | | ||||| | || Sbjct 2058 TTGGTGACAAT-CTTCAAGATCTTCACCCGAGAAGGTCGAT--TGACGATGTGTCGGAAA 2002 Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 | || ||| || ||||| ||||| | ||| || || | ||| | ||| ||| || Sbjct 2001 AGCAAACAAGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAA 1942 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 ||||| || |||||| ||||||||| || | |||||| || || || ||||| ||||| Sbjct 1941 GTCAAGCCAGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAG 1882 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG 17137 || || || || ||||||| || ||||| | | ||||| || | | | ||| | Sbjct 1881 AAAAAGATTCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAAC-TCTATC 1823 Query 17138 TTAC-GAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTAT 17196 | || ||||| | |||| | ||||| | || | ||| || |||| || Sbjct 1822 ATCTTGAGTCCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAAT 1763 Query 17197 GGCCTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||| || ||| || ||||| | | || || ||||||| |||| |||||| | Sbjct 1762 GGCATTGAAAAGAAAATCTCTCTCATATTTA--TCTTTTATATAGGTATTGATGAGCAAC 1705 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||||| ||||| || || || ||||| ||||||||||| ||||| ||||| || Sbjct 1704 GAATACATTTCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCC 1645 Query 17315 TCCGCTATTTGAACTTCCACGTA-GAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373 || | ||| ||||| | |||| | ||| || || |||||||| || || || || || || Sbjct 1644 TCTGGTATCTGAACAT-CACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATC 1586 Query 17374 GCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAAC 17433 || || || || || || || | ||| ||||||| |||||| | | | ||| Sbjct 1585 ACTTGCAGCAAAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTC--TTATTCAAC 1528 Query 17434 GCG--CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCC 17491 | | ||| | | || ||| || ||| ||||||||| |||||||| ||| Sbjct 1527 GAGTTCCAATGATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCC 1468 Query 17492 ACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATCTA 17551 | || || || ||||| | ||| ||||| |||||||| || || || | |||| ||| | Sbjct 1467 TCCGCTTTCTTGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGA 1408 Query 17552 T 17552 | Sbjct 1407 T 1407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517423588624800