Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq4298 188 7e-43 >seq4298 Length=5336 Score = 188 bits (208), Expect = 7e-43 Identities = 587/886 (66%), Gaps = 22/886 (2%) Strand=Plus/Minus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 ||||| || |||| || || ||| ||||||||||| || |||||||| ||||| ||| Sbjct 2295 ACACCACTTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAA 2236 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTACCCCA 16019 || || | |||||| ||| || ||||| | | || ||| || | | | || | Sbjct 2235 GAGATCTGTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAA-ATTTGCCAACATCC-A 2178 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAA 16079 | || | || | ||| || |||| || || | || ||| || || ||| | Sbjct 2177 GCTCGACCAACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGA 2118 Query 16080 TTCCTAT-AAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCT 16138 |||| || ||| | || || | || | || ||||||| ||| || ||| | |||||| Sbjct 2117 TTCCGATCAAGGAG-ACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCT 2059 Query 16139 TCTTTAATGATATCGGTGGCTCGTGTTTC-AGACGGTGTATGGTTTAGGTGTTTAAACAT 16197 | | | || | | || | | ||| ||| || | | |||| || | Sbjct 2058 TTGGTGACAATCTTCAAGA-TCTTCACCCGAGAAGGTCGATTGACGATGTGTCGGAAAAG 2000 Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257 | ||| || || || ||||| |||||||| || | ||| | ||| || ||||| Sbjct 1999 CAAACAAGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGT 1940 Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317 || || ||||| ||||||||| || | ||| || || || ||||| || || || || Sbjct 1939 CAAGCCAGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAA 1880 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTT-AT 16376 || || || || || | || || || | | ||||| || | || | ||| | || Sbjct 1879 AAAGATTCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAAC-TCTATCAT 1821 Query 16377 TACGAATCCATTTCTG-TA-CCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434 || ||||| ||| || |||||| ||||| | | | |||| || |||| || Sbjct 1820 CTTGAGTCCAT--CTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAAT 1763 Query 16435 GGCCTT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAA 16492 ||| || ||| || ||||| | | | |||| ||||||| |||| || || || Sbjct 1762 GGCATTGAAAAGAAAATCTCTCT--CATATTTATCTTTTATATAGGTATTGATGAGCAAC 1705 Query 16493 CTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCC 16552 |||||||| ||||| || || || ||||| |||||||||||||| || ||||||||| Sbjct 1704 GAATACATTTCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCC 1645 Query 16553 TCCGCTATTTGTACTTCCACGTAA-AATCGTTCCGCCAGGTTCTCATTCACGATACCGTC 16611 || | ||| || || || ||| | || || || || || |||||||| || || || || Sbjct 1644 TCTGGTATCTGAACATC-ACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATC 1586 Query 16612 ACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTC-GTCAGATGTAAGAA 16670 |||||||||||| || || || | || ||||||| |||||| || || || | Sbjct 1585 ACTTGCAGCAAAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGA 1526 Query 16671 TATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCA 16730 | ||||| | || ||| || ||| |||||||| |||||||| ||| Sbjct 1525 -GTTCCAATGATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCT 1467 Query 16731 CTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 | || || || ||||| | ||| ||||| |||||||| || ||||| Sbjct 1466 CCGCTTTCTTGTACATCTCCCAGATATCTTTGTATTGAATTGGAAA 1421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511293834055200