Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq6148 105 5e-18 >seq6148 Length=42148 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 101927 TTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAAC 101986 ||||| ||||||| | ||| | | ||| | || || || || ||||| || ||||| Sbjct 25623 TTCCAGGCACACAAAATCATTCGACGATCATTTGGATTCGTCTTAATAGTTTCGATCAAT 25564 Query 101987 TGTTTTAATTGGTCAACTCCTTCTCCTTTATAATC-GCGCCCAA--CACCTTTATATTCT 102043 | || ||| || || |||| ||| | |||||| ||| | || | ||||||| Sbjct 25563 TTAGATAGTTGATCGACACCTTGTCCCTCATAATCAGCGTTCTTGTCAAC---ATATTCT 25507 Query 102044 GCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCA 102103 || |||||||| | ||| ||||| ||||| || ||||| ||||||||||| ||||| || Sbjct 25506 GCACCGAAATGGCGCCATTGAAAGCCATAAACTGGTCCGAGATCTCCTTCTTCTCTATCG 25447 Query 102104 TAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAAT 102153 | || ||||| ||| | |||| ||| || || || || ||||| || Sbjct 25446 TTGAAGCCAAGAGAATCGAGAAATTCTCTCGAACCGTTTGCGTCCCATAT 25397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361168164153860