Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq10223 511 6e-140 seq4298 331 1e-85 >seq10223 Length=44262 Score = 511 bits (566), Expect = 6e-140 Identities = 1203/1805 (67%), Gaps = 42/1805 (2%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || |||||||| || || || ||||||||| | ||||| || || || ||||| | Sbjct 20290 ACCTGAAATTCGCCTGATAAAACTCTCCGATTATAAATGTTGGAAGTGTATGGTTCAAAT 20349 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 || ||||| ||||| || |||||||| || ||||| |||||||| || || || | | | Sbjct 20350 GATTCATTGTTTCCTAAGATTTGAGCTGTCGATGCGGTCGGCATCGGAGCAACTAGAAGA 20409 Query 53270 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 53329 ||||||| ||||||||| | || || ||||| | |||||||| ||| ||||| Sbjct 20410 CTATTTCGTAGACCGTATTTAGCAATATTTTCTTTCAATTTTTCCCAATCCCAGAGATCG 20469 Query 53330 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 53389 | ||| ||| |||||||| || ||| |||||| || Sbjct 20470 GTAGGTTTGCGATCCCACATATCGTATTGGAGAATACCTTTCGATGCGGGAGATCCTTCA 20529 Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449 || || || || ||||| | | |||||| |||||| || ||||||||||| |||||| Sbjct 20530 TAGGTTTCATAAGGTCCATGGATAGCAGCTAATTCACAGCTAGCCTCTAATGCTCCGTAA 20589 Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509 || || |||||||| || | |||| | | || ||||| || ||||| ||||| Sbjct 20590 TAGATTGTTTCGAAAATTTGTATATTCAATTTTTTCGCTTCATCACTTTCAAAAGGATA- 20648 Query 53510 TTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 53568 | |||| | ||| ||||| || |||| ||||| || || || || || ||||| |||| Sbjct 20649 TCTAAGCAAAATGAACGCATCAGCTAGACCTTGTACGCCGATTCCAATCGGTCTGTGTCG 20708 Query 53569 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 53628 | |||| || |||||| || | ||||||||||| | ||| || ||||| || | Sbjct 20709 CATATTTGAACGACGAGCTTCCGGCAAGGGATAATAATTTACATCAATTATTTTGTTCAA 20768 Query 53629 GTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTAT 53688 ||| | || ||||||| | | |||| | |||||| | | || | | Sbjct 20769 ATTTTTCGTCATAACTTTGATGATGTTTTTCAACTCTCCAAAATCGTAGGATAGATTTTT 20828 Query 53689 T------ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT-TAG 53741 | ||||| | || |||| || || ||||||||||| |||| || | | | Sbjct 20829 TTGATTGACAAATTTTGGTAACGCAACCGAAGCTAGATTACAAACAGCTATTTCGTCTGG 20888 Query 53742 C-ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 53800 | || | ||||| | ||||| |||||||||||| || |||||||| || | |||| Sbjct 20889 CGAT--GAATATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGATGGTGCCAAGATTT 20946 Query 53801 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCA 53860 | ||||||| ||| | ||||| ||| || || | |||||||| || || ||||| Sbjct 20947 TTTTGATTAGATTTTCTATTACAATGATCTTTGTAGACCATGAATGGTGTTCCGGTTTCC 21006 Query 53861 ATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTC 53920 | ||| | || | || || ||| | ||||||| ||| | || || || Sbjct 21007 ACCTGAGCATCGACTATTGCGAACCAAAGTTCACGAGCTGGAATTT--GTTTGCGATATC 21064 Query 53921 TTTTCTCTTTCGTATAGTGT--ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCA 53978 ||||||||| ||| | ||| | ||| || || || |||||||||| | || Sbjct 21065 GATTCTCTTTCTCATATTTCTCATAGAGAGCTTCGAATTCTTCGCCCCAAACATCTTGCA 21124 Query 53979 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTC 54037 ||||||||||||| | || |||||||||||||| | || || ||| | |||||| Sbjct 21125 ATCCAGGACATTCTTTGGGGCACATCAACGACCAAACCCCATCGGT-TTCGCAACGTTTC 21183 Query 54038 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTT 54096 || || | ||| || ||||| | || ||| || |||||||||| | ||| || Sbjct 21184 ATGAACAAATCCGGTATCCATAATGC-ATAGAAAAGATCTCTGGCACGTAATTCTTCTGA 21242 Query 54097 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156 || ||||| ||| | || | || | | |||||| | ||||||||||||||| || Sbjct 21243 GCCAGTATTTCGTTTCAAATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCCAAATA 21302 Query 54157 TATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 54216 ||| | | | | ||||| || || || || || ||||| | || | |||||| | || Sbjct 21303 TATTGCGAAAGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTATCGTT 21362 Query 54217 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 54276 ||||||| |||||| |||| | |||||| || ||| ||||| || || || Sbjct 21363 GTAAACTCGCAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATGTACGA 21422 Query 54277 TCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAA 54336 |||| | || |||||| | || ||||| || || || || || || || | Sbjct 21423 TCCATTTGCTCGAATACAATGAACATTAAGACCGATGCCACCGGCTGACTTCGATATAAT 21482 Query 54337 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 54396 || ||| |||| |||||||| || || || || ||||||||||| ||| | | || Sbjct 21483 AGCACATTGTTTCAACGTATCGTAAATACCTTCAATACTATCATCGGCCATCGTCAATAA 21542 Query 54397 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 54456 |||||| ||||||||| || | | || || | |||||| || ||||| || ||||| Sbjct 21543 AAAACATGAAGACATTTGAGGATGGGTTGTACCAGAATTAAACAAAGTAGGTGAGGCGTG 21602 Query 54457 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTG 54516 ||||| || ||| | |||||| ||||||||||| || || || ||||| || Sbjct 21603 TGTAAAAAGACCTTTAGACATTAGATTATACGTCTCGATGGCCGAATCAATATCTTCTTT 21662 Query 54517 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 54576 ||| || || | ||||| | ||| ||||| ||||| |||||||| || | || || Sbjct 21663 ATGTATACCGATGGCGACTCTCATCAACATATGCTGTGGTCTTTCGACAACTTTCCCATT 21722 Query 54577 TATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 54636 | | | | ||| | | || ||||| ||||||||||| ||||| ||| || Sbjct 21723 CACTCGTAATAGATAGCTTCGTAATAAGGTTTTGAAACCAAAATAATTGTAACTAAAATC 21782 Query 54637 TCGTTCGTAAATAATAACTGAGTTGAG---------TTTATCC-TTA-TATTTGTTAACT 54685 ||| || ||||| || |||| ||||| |||||| ||| |||| ||| Sbjct 21783 TCGATCATAAATTATCGCTGAATTGAGACGATCAGAGTTATCCATTACGATTTTATAA-- 21840 Query 54686 ACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAG 54745 |||| ||| | | ||||||||| | ||| || |||| || |||||| Sbjct 21841 ACAT-CATCG--------GCGATAATCGGAATAGATTTGCCTGTTTTCTCATCGACATAA 21891 Query 54746 TTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGAT 54805 || | | ||| | || || || || ||| || || ||||| |||||||| || Sbjct 21892 TTGTAGAGATCATGAATGACATCTGAGAAATTTTTCTTCGTCTCTTTTTGTAGATTAGAA 21951 Query 54806 ACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCT 54865 | | |||| ||| || |||| |||||||| | ||||||||| || || || || Sbjct 21952 ATAGAGATTCGAGCAGCGAGAACAGCATAATCGGTATGTTGTGTTGTCATCGTAGCAGCG 22011 Query 54866 ATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATA 54925 || || || | || ||||||| || ||||| || ||| ||| || || | ||| Sbjct 22012 ATCTCCGCAGCTAGCTCATCCAATTGGACTGTTGTAACGCCAGAATAGATACCATTGATG 22071 Query 54926 ACCTT 54930 ||||| Sbjct 22072 ACCTT 22076 Score = 131 bits (144), Expect = 2e-25 Identities = 177/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 || |||| ||||||||||||| | || || ||| | ||||||||||| ||||||||| Sbjct 19863 TTATCCACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACATTCCC 19922 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||| | ||| | ||| | || |||||||| ||| | ||||| | | | Sbjct 19923 GTTTTCAAACCATTTCGCCAGCAATAGAAATGCATCGATGTCATTTTGGCCATAGTAGCC 19982 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || || ||||| ||||||| ||||||||||||||||||||| || || | ||| ||||| Sbjct 19983 TCAGCGATATGAATATTCAAAGATTGACTTTGATCGATGAACGCACCACGATCTACAGCC 20042 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 53038 || | || | || || || || ||||||| || || || | | ||||| ||| Sbjct 20043 ATCTCACAAATTCTTTTCTGAGGGATCTCCCAAACGGTCTTGTAGAGTGCTTTAATTTCT 20102 Query 53039 TCTGGAA 53045 | ||||| Sbjct 20103 TTTGGAA 20109 >seq4298 Length=5336 Score = 331 bits (366), Expect = 1e-85 Identities = 627/918 (68%), Gaps = 25/918 (3%) Strand=Plus/Minus Query 23842 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATAT 23901 ||||||| ||||| | ||||||||||||||||||||||||||||| || || || || | Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229 Query 23902 TTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAA 23961 |||||||||| | ||||||| | ||| || | | | || ||| || | Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCCAGCTCGACCA 2169 Query 23962 TCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAA 24021 ||| | ||| ||| | || || || |||||| | ||| ||||| || | Sbjct 2168 ACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATCA 2109 Query 24022 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 24081 || || | || | || | ||||||||| ||||| |||||| | || | || Sbjct 2108 AGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACAA 2049 Query 24082 TAGATCTTACTGTTTCTTCACTCG-----GTGGATACAATAAATGTTTAAACATCAAACA 24136 | ||| | | |||||| || || ||| | | ||| || | |||||| Sbjct 2048 T----CTTCAAGAT-CTTCACCCGAGAAGGTCGATTGACGATGTGTCGGAAAAGCAAACA 1994 Query 24137 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 24196 || ||||| || || || || || || | || ||||| || || || | || Sbjct 1993 AGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTCAAGCC 1934 Query 24197 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 24256 ||||| || || || |||||||||||||| || | |||||| || ||||| || || || Sbjct 1933 AGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAGAT 1874 Query 24257 TCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTA---T 24313 |||||| || || || || |||| ||| | ||| || | | | || |||| | | Sbjct 1873 TCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCTTGAGT 1814 Query 24314 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 ||| | |||||| | || ||||| | |||||||||| ||| | || ||||| || Sbjct 1813 CCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATTGAA 1754 Query 24374 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATACATT 24431 ||| | | | | |||| ||||||| | ||| |||| || | || || ||||||| Sbjct 1753 AAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGA--ATACATT 1696 Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491 || || ||||| ||||| ||||| || |||||||| || ||||||| |||||| | ||| Sbjct 1695 TCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTATC 1636 Query 24492 TGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551 || || || | || || || |||| ||| ||||| |||||||| ||||| || ||| Sbjct 1635 TGAACATCACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAGCA 1576 Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA----TTCCA 24607 || || || || ||||| || |||| |||||| | | ||| | | ||||| Sbjct 1575 AAGAATGCTAACACATGAGAGATGAAATGTTTTTCAT----TCTTATTCAACGAGTTCCA 1520 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 || || | ||| | || ||| |||||||| ||||||||||| |||||||| || || Sbjct 1519 ATGATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTT 1460 Query 24668 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 24727 || ||||| | |||||| || | |||||||||||||| | |||||||| ||| ||||| Sbjct 1459 CTTGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGATTCGGATT 1400 Query 24728 TTTTGCAAGGATTGGTTC 24745 || | || | |||||| Sbjct 1399 TTCTCGTAGCAATGGTTC 1382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593581630132800