Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq10223 511 6e-140
seq4298 331 1e-85
>seq10223
Length=44262
Score = 511 bits (566), Expect = 6e-140
Identities = 1203/1805 (67%), Gaps = 42/1805 (2%)
Strand=Plus/Plus
Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209
|| |||||||| || || || ||||||||| | ||||| || || || ||||| |
Sbjct 20290 ACCTGAAATTCGCCTGATAAAACTCTCCGATTATAAATGTTGGAAGTGTATGGTTCAAAT 20349
Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269
|| ||||| ||||| || |||||||| || ||||| |||||||| || || || | | |
Sbjct 20350 GATTCATTGTTTCCTAAGATTTGAGCTGTCGATGCGGTCGGCATCGGAGCAACTAGAAGA 20409
Query 53270 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 53329
||||||| ||||||||| | || || ||||| | |||||||| ||| |||||
Sbjct 20410 CTATTTCGTAGACCGTATTTAGCAATATTTTCTTTCAATTTTTCCCAATCCCAGAGATCG 20469
Query 53330 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 53389
| ||| ||| |||||||| || ||| |||||| ||
Sbjct 20470 GTAGGTTTGCGATCCCACATATCGTATTGGAGAATACCTTTCGATGCGGGAGATCCTTCA 20529
Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449
|| || || || ||||| | | |||||| |||||| || ||||||||||| ||||||
Sbjct 20530 TAGGTTTCATAAGGTCCATGGATAGCAGCTAATTCACAGCTAGCCTCTAATGCTCCGTAA 20589
Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509
|| || |||||||| || | |||| | | || ||||| || ||||| |||||
Sbjct 20590 TAGATTGTTTCGAAAATTTGTATATTCAATTTTTTCGCTTCATCACTTTCAAAAGGATA- 20648
Query 53510 TTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 53568
| |||| | ||| ||||| || |||| ||||| || || || || || ||||| ||||
Sbjct 20649 TCTAAGCAAAATGAACGCATCAGCTAGACCTTGTACGCCGATTCCAATCGGTCTGTGTCG 20708
Query 53569 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 53628
| |||| || |||||| || | ||||||||||| | ||| || ||||| || |
Sbjct 20709 CATATTTGAACGACGAGCTTCCGGCAAGGGATAATAATTTACATCAATTATTTTGTTCAA 20768
Query 53629 GTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTAT 53688
||| | || ||||||| | | |||| | |||||| | | || | |
Sbjct 20769 ATTTTTCGTCATAACTTTGATGATGTTTTTCAACTCTCCAAAATCGTAGGATAGATTTTT 20828
Query 53689 T------ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT-TAG 53741
| ||||| | || |||| || || ||||||||||| |||| || | | |
Sbjct 20829 TTGATTGACAAATTTTGGTAACGCAACCGAAGCTAGATTACAAACAGCTATTTCGTCTGG 20888
Query 53742 C-ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 53800
| || | ||||| | ||||| |||||||||||| || |||||||| || | ||||
Sbjct 20889 CGAT--GAATATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGATGGTGCCAAGATTT 20946
Query 53801 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCA 53860
| ||||||| ||| | ||||| ||| || || | |||||||| || || |||||
Sbjct 20947 TTTTGATTAGATTTTCTATTACAATGATCTTTGTAGACCATGAATGGTGTTCCGGTTTCC 21006
Query 53861 ATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTC 53920
| ||| | || | || || ||| | ||||||| ||| | || || ||
Sbjct 21007 ACCTGAGCATCGACTATTGCGAACCAAAGTTCACGAGCTGGAATTT--GTTTGCGATATC 21064
Query 53921 TTTTCTCTTTCGTATAGTGT--ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCA 53978
||||||||| ||| | ||| | ||| || || || |||||||||| | ||
Sbjct 21065 GATTCTCTTTCTCATATTTCTCATAGAGAGCTTCGAATTCTTCGCCCCAAACATCTTGCA 21124
Query 53979 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTC 54037
||||||||||||| | || |||||||||||||| | || || ||| | ||||||
Sbjct 21125 ATCCAGGACATTCTTTGGGGCACATCAACGACCAAACCCCATCGGT-TTCGCAACGTTTC 21183
Query 54038 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTT 54096
|| || | ||| || ||||| | || ||| || |||||||||| | ||| ||
Sbjct 21184 ATGAACAAATCCGGTATCCATAATGC-ATAGAAAAGATCTCTGGCACGTAATTCTTCTGA 21242
Query 54097 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156
|| ||||| ||| | || | || | | |||||| | ||||||||||||||| ||
Sbjct 21243 GCCAGTATTTCGTTTCAAATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCCAAATA 21302
Query 54157 TATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 54216
||| | | | | ||||| || || || || || ||||| | || | |||||| | ||
Sbjct 21303 TATTGCGAAAGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTATCGTT 21362
Query 54217 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 54276
||||||| |||||| |||| | |||||| || ||| ||||| || || ||
Sbjct 21363 GTAAACTCGCAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATGTACGA 21422
Query 54277 TCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAA 54336
|||| | || |||||| | || ||||| || || || || || || || |
Sbjct 21423 TCCATTTGCTCGAATACAATGAACATTAAGACCGATGCCACCGGCTGACTTCGATATAAT 21482
Query 54337 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 54396
|| ||| |||| |||||||| || || || || ||||||||||| ||| | | ||
Sbjct 21483 AGCACATTGTTTCAACGTATCGTAAATACCTTCAATACTATCATCGGCCATCGTCAATAA 21542
Query 54397 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 54456
|||||| ||||||||| || | | || || | |||||| || ||||| || |||||
Sbjct 21543 AAAACATGAAGACATTTGAGGATGGGTTGTACCAGAATTAAACAAAGTAGGTGAGGCGTG 21602
Query 54457 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTG 54516
||||| || ||| | |||||| ||||||||||| || || || ||||| ||
Sbjct 21603 TGTAAAAAGACCTTTAGACATTAGATTATACGTCTCGATGGCCGAATCAATATCTTCTTT 21662
Query 54517 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 54576
||| || || | ||||| | ||| ||||| ||||| |||||||| || | || ||
Sbjct 21663 ATGTATACCGATGGCGACTCTCATCAACATATGCTGTGGTCTTTCGACAACTTTCCCATT 21722
Query 54577 TATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 54636
| | | | ||| | | || ||||| ||||||||||| ||||| ||| ||
Sbjct 21723 CACTCGTAATAGATAGCTTCGTAATAAGGTTTTGAAACCAAAATAATTGTAACTAAAATC 21782
Query 54637 TCGTTCGTAAATAATAACTGAGTTGAG---------TTTATCC-TTA-TATTTGTTAACT 54685
||| || ||||| || |||| ||||| |||||| ||| |||| |||
Sbjct 21783 TCGATCATAAATTATCGCTGAATTGAGACGATCAGAGTTATCCATTACGATTTTATAA-- 21840
Query 54686 ACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAG 54745
|||| ||| | | ||||||||| | ||| || |||| || ||||||
Sbjct 21841 ACAT-CATCG--------GCGATAATCGGAATAGATTTGCCTGTTTTCTCATCGACATAA 21891
Query 54746 TTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGAT 54805
|| | | ||| | || || || || ||| || || ||||| |||||||| ||
Sbjct 21892 TTGTAGAGATCATGAATGACATCTGAGAAATTTTTCTTCGTCTCTTTTTGTAGATTAGAA 21951
Query 54806 ACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCT 54865
| | |||| ||| || |||| |||||||| | ||||||||| || || || ||
Sbjct 21952 ATAGAGATTCGAGCAGCGAGAACAGCATAATCGGTATGTTGTGTTGTCATCGTAGCAGCG 22011
Query 54866 ATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATA 54925
|| || || | || ||||||| || ||||| || ||| ||| || || | |||
Sbjct 22012 ATCTCCGCAGCTAGCTCATCCAATTGGACTGTTGTAACGCCAGAATAGATACCATTGATG 22071
Query 54926 ACCTT 54930
|||||
Sbjct 22072 ACCTT 22076
Score = 131 bits (144), Expect = 2e-25
Identities = 177/247 (72%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858
|| |||| ||||||||||||| | || || ||| | ||||||||||| |||||||||
Sbjct 19863 TTATCCACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACATTCCC 19922
Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918
||||| | ||| | ||| | || |||||||| ||| | ||||| | | |
Sbjct 19923 GTTTTCAAACCATTTCGCCAGCAATAGAAATGCATCGATGTCATTTTGGCCATAGTAGCC 19982
Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978
|| || ||||| ||||||| ||||||||||||||||||||| || || | ||| |||||
Sbjct 19983 TCAGCGATATGAATATTCAAAGATTGACTTTGATCGATGAACGCACCACGATCTACAGCC 20042
Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 53038
|| | || | || || || || ||||||| || || || | | ||||| |||
Sbjct 20043 ATCTCACAAATTCTTTTCTGAGGGATCTCCCAAACGGTCTTGTAGAGTGCTTTAATTTCT 20102
Query 53039 TCTGGAA 53045
| |||||
Sbjct 20103 TTTGGAA 20109
>seq4298
Length=5336
Score = 331 bits (366), Expect = 1e-85
Identities = 627/918 (68%), Gaps = 25/918 (3%)
Strand=Plus/Minus
Query 23842 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATAT 23901
||||||| ||||| | ||||||||||||||||||||||||||||| || || || || |
Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229
Query 23902 TTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAA 23961
|||||||||| | ||||||| | ||| || | | | || ||| || |
Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCCAGCTCGACCA 2169
Query 23962 TCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAA 24021
||| | ||| ||| | || || || |||||| | ||| ||||| || |
Sbjct 2168 ACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATCA 2109
Query 24022 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 24081
|| || | || | || | ||||||||| ||||| |||||| | || | ||
Sbjct 2108 AGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACAA 2049
Query 24082 TAGATCTTACTGTTTCTTCACTCG-----GTGGATACAATAAATGTTTAAACATCAAACA 24136
| ||| | | |||||| || || ||| | | ||| || | ||||||
Sbjct 2048 T----CTTCAAGAT-CTTCACCCGAGAAGGTCGATTGACGATGTGTCGGAAAAGCAAACA 1994
Query 24137 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 24196
|| ||||| || || || || || || | || ||||| || || || | ||
Sbjct 1993 AGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTCAAGCC 1934
Query 24197 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 24256
||||| || || || |||||||||||||| || | |||||| || ||||| || || ||
Sbjct 1933 AGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAGAT 1874
Query 24257 TCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTA---T 24313
|||||| || || || || |||| ||| | ||| || | | | || |||| | |
Sbjct 1873 TCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCTTGAGT 1814
Query 24314 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373
||| | |||||| | || ||||| | |||||||||| ||| | || ||||| ||
Sbjct 1813 CCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATTGAA 1754
Query 24374 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATACATT 24431
||| | | | | |||| ||||||| | ||| |||| || | || || |||||||
Sbjct 1753 AAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGA--ATACATT 1696
Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491
|| || ||||| ||||| ||||| || |||||||| || ||||||| |||||| | |||
Sbjct 1695 TCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTATC 1636
Query 24492 TGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551
|| || || | || || || |||| ||| ||||| |||||||| ||||| || |||
Sbjct 1635 TGAACATCACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAGCA 1576
Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA----TTCCA 24607
|| || || || ||||| || |||| |||||| | | ||| | | |||||
Sbjct 1575 AAGAATGCTAACACATGAGAGATGAAATGTTTTTCAT----TCTTATTCAACGAGTTCCA 1520
Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667
|| || | ||| | || ||| |||||||| ||||||||||| |||||||| || ||
Sbjct 1519 ATGATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTT 1460
Query 24668 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 24727
|| ||||| | |||||| || | |||||||||||||| | |||||||| ||| |||||
Sbjct 1459 CTTGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGATTCGGATT 1400
Query 24728 TTTTGCAAGGATTGGTTC 24745
|| | || | ||||||
Sbjct 1399 TTCTCGTAGCAATGGTTC 1382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593581630132800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |