Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq135 118 9e-22 seq718 89.7 4e-13 seq4581 86.0 5e-12 >seq135 Length=1279 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||||||||| || ||||||||||| ||| ||||| | Sbjct 660 ATGCAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 719 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| |||||||||||| | || ||||||| Sbjct 720 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 779 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | || ||||| ||||||||| |||||||| | ||| || |||||||||| Sbjct 780 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAAT 839 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||| || ||||| ||| | ||| |||| || || Sbjct 840 ATTCAAAAAGAATCCACTTTACACTTGGTATTGCG 874 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || ||||||| ||||| || || |||||||| ||| |||||| | Sbjct 432 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCC 491 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| |||||||||||| | || |||||| Sbjct 492 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 551 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || || ||||| ||||||||| |||||||| |||| | |||||| ||| Sbjct 552 CAACGTCTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 611 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || || || ||||||||| | ||| ||||||| || Sbjct 612 ATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCG 646 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || ||||||||| | || |||||||||| | | || || || || ||| Sbjct 60 AAAATTCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTCGCTGGTAAA 119 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| |||||||| | ||| || |||||||||||| ||||| ||||| ||| | || Sbjct 120 CAATTGGAAGATGGTAGAACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCAT 179 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 ||||||| ||| | || || || Sbjct 180 TTGGTGTTGCGACTCCGTGGTGG 202 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||||||||| || ||||| || || ||| ||||| | Sbjct 204 ATGCAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 263 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||||| || ||||||||| | || ||||||| Sbjct 264 GATACTATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 323 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | || ||||| || |||||| |||||||| |||| | |||||| ||| Sbjct 324 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 383 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || || || ||||| ||| | ||| ||||||| || Sbjct 384 ATCCAAAAAGAATCCACTTTACACTTGGTGTTGCG 418 >seq718 Length=674 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| ||||| || ||||||||||| ||| || || | Sbjct 46 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCC 105 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || | || |||||| || ||||||||| | || ||||||| Sbjct 106 GATACGATTGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAA 165 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | || || || || |||||| |||||||| |||| | |||||| ||| Sbjct 166 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 225 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || ||||| ||| | || ||||||| ||| | || || || Sbjct 226 ATCCAAAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCGTGGTGG 272 >seq4581 Length=275 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | || |||||| ||| | || || ||||| ||||||||| ||||| Sbjct 254 GATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTAATTTTTGCTGGCAAACAATTGGAA 195 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| || |||||| || |||||||| ||||| ||| | || |||| || Sbjct 194 GATGGTAGAACATTGAGCGATTATAACATTCAGAAAGAATCAACTTTGCATTTGGTATTG 135 Query 29175 CG 29176 || Sbjct 134 CG 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428237544293300