Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq135 131 1e-25
seq718 104 2e-17
seq4581 86.0 5e-12
>seq135
Length=1279
Score = 131 bits (144), Expect = 1e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || ||| | ||||||||||| || ||||||||||| ||| ||||| |
Sbjct 660 ATGCAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 719
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | || |||| |||||| |||||||||||| | || |||||||
Sbjct 720 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 779
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||| | | || ||||| |||||||||||||||||| | ||| || ||||||||||
Sbjct 780 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAAT 839
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249
|||||||| ||||| ||| | ||| |||| || ||
Sbjct 840 ATTCAAAAAGAATCCACTTTACACTTGGTATTGCG 874
Score = 122 bits (134), Expect = 7e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || || ||||||| ||||| || || |||||||| ||| |||||| |
Sbjct 432 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCC 491
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | || |||| |||||| |||||||||||| | || ||||||
Sbjct 492 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 551
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||| | || || ||||| |||||||||||||||||| |||| | |||||| |||
Sbjct 552 CAACGTCTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 611
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249
|| ||||| ||||||||| | ||| ||||||| ||
Sbjct 612 ATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCG 646
Score = 100 bits (110), Expect = 2e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || ||| | ||||||||||| || ||||| || || ||| ||||| |
Sbjct 204 ATGCAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 263
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | || |||| ||||| || ||||||||| | || |||||||
Sbjct 264 GATACTATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 323
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||| | | || ||||| || ||||||||||||||| |||| | |||||| |||
Sbjct 324 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 383
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249
|| ||||| ||||| ||| | ||| ||||||| ||
Sbjct 384 ATCCAAAAAGAATCCACTTTACACTTGGTGTTGCG 418
Score = 87.8 bits (96), Expect = 1e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178
|||||| || ||||||||| | || |||||||||| | | || || || || |||
Sbjct 60 AAAATTCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTCGCTGGTAAA 119
Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238
|||||||||||| | ||| || |||||||||||| || || ||||| ||| | ||
Sbjct 120 CAATTGGAAGATGGTAGAACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCAT 179
Query 25239 ATGGTGTTACGATTACGAGGAGG 25261
||||||| ||| | || || ||
Sbjct 180 TTGGTGTTGCGACTCCGTGGTGG 202
>seq718
Length=674
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || ||| | ||||| ||||| || ||||||||||| ||| || || |
Sbjct 46 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCC 105
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| ||| | | || |||| |||||| || ||||||||| | || |||||||
Sbjct 106 GATACGATTGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAA 165
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||| | | || || || || ||||||||||||||| |||| | |||||| |||
Sbjct 166 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 225
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261
|| ||||| ||||| ||| | || ||||||| ||| | || || ||
Sbjct 226 ATCCAAAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCGTGGTGG 272
Score = 96.9 bits (106), Expect = 3e-15
Identities = 155/222 (70%), Gaps = 7/222 (3%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || ||| | ||||| ||||| || ||||| || || ||| ||||| |
Sbjct 274 ATGCAGATTTTCGTTAAAACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 333
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | || |||| ||||| || ||||||||| | || |||||||
Sbjct 334 GATACAATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 393
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAA-----AACTATGGCCGA 25207
||| | | || || || |||||||||||||||||| || || |||| | |||
Sbjct 394 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAACTCNGAACTCTCAGCGA 453
Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249
||| ||||| ||||| ||||||||| | ||| ||||||| ||
Sbjct 454 TTATAATATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCG 495
>seq4581
Length=275
Score = 86.0 bits (94), Expect = 5e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
|||||||||||| | || |||||| ||| | || || ||||| |||||||||||||||
Sbjct 254 GATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTAATTTTTGCTGGCAAACAATTGGAA 195
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247
||| | ||| || |||||| || ||||| || ||||| ||| | || |||| ||
Sbjct 194 GATGGTAGAACATTGAGCGATTATAACATTCAGAAAGAATCAACTTTGCATTTGGTATTG 135
Query 25248 CG 25249
||
Sbjct 134 CG 133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410702375788040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |